SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,52091,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52091 - SpoIIaa-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   15
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   10
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   7
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_76_2   (Rabbit)   5
Ochotona_princeps_76   (American pika)   5
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   5
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   7
Felis_catus_76_6.2   (Domestic cat)   5
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   5
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   3
Loxodonta_africana_76_3   (African savanna elephant)   5
Echinops_telfairi_76   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 4
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_76_1   (Coelacanth)   5
Lepisosteus_oculatus_76   (Spotted gar)   3
Takifugu_rubripes_76_4   (Torafugu)   5
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   2
Oikopleura_dioica 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 7
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   3
Helobdella_robusta_ 2
Capitella_sp._I_ 1
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 2
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 2
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 4
Meloidogyne_hapla_ 2
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 5
Caenorhabditis_elegans_76_235   (Roundworm)   3
Caenorhabditis_briggsae_2 3
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   1
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 1
Hydra_vulgaris 2
Amphimedon_queenslandica 2
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 3
Mortierella_verticillata_NRRL_6337_ 2
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 5
Mucor_circinelloides_ 3
Rhizomucor_miehei_CAU432_ 4
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 0
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 2
Trametes_versicolor_v1.0 2
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   3
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 3
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 2
Stagonospora_nodorum_ 2
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 2
Septoria_musiva_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 1
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 2
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 3
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 2
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 2
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   3
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 4
Allomyces_macrogynus_ATCC_38327_ 4
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 3
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 8
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   3
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   2
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   3
Linum_usitatissimum_v200   (Flax)   4
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   3
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 2
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 4
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 2
Oryza_nivara_22 3
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   3
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   5
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1
Physcomitrella_patens 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Ostreococcus_tauri_ 0
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 1
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 4
Cyanophora_paradoxa_ 1
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Ectocarpus_siliculosus 3
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   4
Phytophthora_sojae_1.1 3
Phytophthora_infestans_T30-4_ 2
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 4
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 1
Symbiodinium_minutum_clade_B1_v1.2 9
Emiliania_huxleyi_CCMP1516_ 4
Pseudanabaena_sp._PCC_7367 1
Gloeocapsa_sp._PCC_7428 1
Slackia_heliotrinireducens_DSM_20476 1
Modestobacter_marinus 2
Thermobifida_fusca_YX 1
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 0
Streptomyces_avermitilis_MA-4680 1
Pseudonocardia_dioxanivorans_CB1190 1
Microlunatus_phosphovorus_NM-1 2
Verrucosispora_maris_AB-18-032 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_chubuense_NBB4 1
Brachybacterium_faecium_DSM_4810 1
Roseiflexus_castenholzii_DSM_13941 2
Chloroflexus_aggregans_DSM_9485 1
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 1
Desulfitobacterium_hafniense_Y51 1
Desulfitobacterium_dehalogenans_ATCC_51507 1
Eubacterium_eligens_ATCC_27750 1
[Ruminococcus]_obeum 1
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 1
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Halanaerobium_hydrogeniformans 1
Paenibacillus_terrae_HPL-003 1
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 1
Solibacillus_silvestris_StLB046 1
Lysinibacillus_sphaericus_C3-41 1
Anoxybacillus_flavithermus_WK1 1
Bacillus_sp._1NLA3E 1
Chlorobium_tepidum_TLS 1
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 1
Owenweeksia_hongkongensis_DSM_17368 1
Krokinobacter_sp._4H-3-7-5 1
Cellulophaga_lytica_DSM_7489 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Waddlia_chondrophila_WSU_86-1044 1
Candidatus_Protochlamydia_amoebophila_UWE25 1
Parachlamydia_acanthamoebae_UV-7 1
Coraliomargarita_akajimensis_DSM_45221 1
Opitutus_terrae_PB90-1 1
Aquifex_aeolicus_VF5 1
Hydrogenobacter_thermophilus_TK-6 1
Candidatus_Saccharimonas_aalborgensis 1
Acidithiobacillus_caldus_SM-1 1
Campylobacter_concisus_13826 1
Desulfobacca_acetoxidans_DSM_11109 1
Desulfomonile_tiedjei_DSM_6799 2
Desulfotalea_psychrophila_LSv54 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 1
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_aespoeensis_Aspo-2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Geobacter_sulfurreducens_KN400 1
Sorangium_cellulosum_'So_ce_56' 0
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Laribacter_hongkongensis_HLHK9 1
Methylibium_petroleiphilum_PM1 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 2
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 1
Bordetella_petrii_DSM_12804 1
Bordetella_avium_197N 1
Bordetella_pertussis_Tohama_I 1
Bordetella_bronchiseptica_RB50 1
Thiobacillus_denitrificans_ATCC_25259 2
Magnetococcus_marinus_MC-1 2
Xanthobacter_autotrophicus_Py2 1
Methylocella_silvestris_BL2 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1
Oceanimonas_sp._GK1 1
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Vibrio_sp._Ex25 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Vibrio_anguillarum_775 1
Vibrio_furnissii_NCTC_11218 1
Vibrio_vulnificus_MO6-24/O 1
Psychromonas_ingrahamii_37 1
Shewanella_denitrificans_OS217 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 1
Shewanella_frigidimarina_NCIMB_400 1
Shewanella_putrefaciens_CN-32 1
Proteus_mirabilis_HI4320 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   10
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 3
Saccharomyces_cerevisiae_FostersB 2
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 2
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 3
Saccharomyces_cerevisiae_AWRI796 2
Saccharomyces_cerevisiae_Sigma1278b 3
Saccharomyces_cerevisiae_W303 3
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Neospora_caninum_Nc-Liverpool_6.2 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._ATCC_51142 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Adlercreutzia_equolifaciens_DSM_19450 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_collinus_Tu_365 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1
Desulfosporosinus_meridiei_DSM_13257 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1
Roseburia_intestinalis_XB6B4 1
Clostridium_sp._SY8519 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 4
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_B4264 1
Bacillus_cereus_E33L 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Hydrogenobacter_thermophilus_TK-6 1
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 2
Desulfovibrio_vulgaris_str._Hildenborough 1
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 0
Myxococcus_stipitatus_DSM_14675 1
Pandoraea_pnomenusa_3kgm 1
Burkholderia_sp._YI23 1
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_parapertussis_Bpp5 1
Bordetella_bronchiseptica_MO149 1
Bordetella_bronchiseptica_253 1
Sulfuricella_denitrificans_skB26 2
Leisingera_methylohalidivorans_DSM_14336 1
Rhodobacter_sphaeroides_2.4.1 1
Aeromonas_hydrophila_ML09-119 1
Vibrio_sp._EJY3 1
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_vulnificus_CMCP6 1
Vibrio_vulnificus_YJ016 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 1
Proteus_mirabilis_BB2000 1
Morganella_morganii_subsp._morganii_KT 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   5
Mus_musculus_69_38   (House mouse)   5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   5
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   5
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_69_1   (Giant panda)   5
Canis_familiaris_69_3.1   (Dog)   5
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   5
Myotis_lucifugus_69_2.0   (Little brown bat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   5
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   3
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   4
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   4
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   2
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3
Arabidopsis_thaliana_10   (Thale cress)   2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   17
Homo_sapiens__(NCBI_version)   (Human)   9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   3
NCBI_plasmid_sequences_(Plasmids) 9
Uniprot_2018_03_genome 21160
NCBI_2017_08_genome 6323
Protozoadb_2010_08_(Protozoadb) 4
TargetDB__(Targets) 8
STRING_v9.0.5_(STRING) 274

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]