SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,52467,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52467 - DHS-like NAD/FAD-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   6
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_76_3.1   (Western gorilla)   6
Pongo_abelii_76_2   (Sumatran orangutan)   3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6
Otolemur_garnettii_76_3   (Small-eared galago)   4
Rattus_norvegicus_76_5.0   (Norway rat)   4
Mus_musculus_76_38   (House mouse)   9
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   4
Ovis_aries_76_3.1   (Sheep)   3
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_76_1   (Giant panda)   3
Canis_familiaris_76_3.1   (Dog)   4
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   3
Myotis_lucifugus_76_2.0   (Little brown bat)   3
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   3
Echinops_telfairi_76   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 8
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_76_1   (Coelacanth)   3
Lepisosteus_oculatus_76   (Spotted gar)   5
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3
Takifugu_rubripes_76_4   (Torafugu)   5
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6
Oryzias_latipes_76_1   (Japanese medaka)   4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5
Poecilia_formosa_76   (Amazon molly)   5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   5
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 10
Octopus_bimaculoides_280 3
Crassostrea_gigas_22   (Pacific oyster)   8
Lottia_gigantea_   (Owl limpet)   4
Helobdella_robusta_ 1
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   3
Drosophila_grimshawi_1.3 4
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 4
Drosophila_suzukii 3
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   4
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   3
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 3
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   5
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   5
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 2
Amphimedon_queenslandica 5
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 2
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 4
Conidiobolus_coronatus_NRRL28638_v1.0 3
Mortierella_verticillata_NRRL_6337_ 6
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 1
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 4
Ustilago_maydis_ 4
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 6
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 6
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 4
Piloderma_croceum_F_1598_v1.0 4
Serpula_lacrymans_var._lacrymans_S7.9_ 5
Coniophora_puteana 4
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 5
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 3
Scleroderma_citrinum_Foug_A_v1.0 5
Coprinopsis_cinerea_okayama7_130_v3 5
Pleurotus_ostreatus_   (Oyster mushroom)   4
Amanita_thiersii_Skay4041_v1.0 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 5
Hebeloma_cylindrosporum_h7_v2.0 5
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 5
Fomitopsis_pinicolav1.0 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 5
Trametes_versicolor_v1.0 5
Tremella_mesenterica_   (Witches' butter)   4
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 5
Magnaporthe_poae_ATCC_64411_22 3
Magnaporthe_grisea_70-15_ 6
Podospora_anserina_ 4
Sporotrichum_thermophile_ATCC_42464_ 4
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 5
Neurospora_crassa_OR74A_ 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   3
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 3
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 3
Trichoderma_atroviride_ 3
Trichoderma_citrinoviride_v1.0 4
Trichoderma_reesei_1.2 3
Trichoderma_virens_Gv29-8_ 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   5
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 5
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 4
Setosphaeria_turcica_v1.0 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5
Cochliobolus_victoriae_FI3_v1.0 4
Cochliobolus_carbonum_26-R-13_v1.0 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 5
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 5
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 3
Septoria_musiva_v1.0 3
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4
Paracoccidioides_brasiliensis_Pb18_ 4
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 5
Ajellomyces_dermatitidis_SLH14081_ 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 5
Aspergillus_brasiliensis_v1.0 4
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 4
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 4
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4
Pichia_stipitis_CBS_6054_ 4
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 3
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 4
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 4
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 5
Kluyveromyces_lactis 3
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 3
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 4
Allomyces_macrogynus_ATCC_38327_ 6
Spizellomyces_punctatus_DAOM_BR117_ 3
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 2
Selaginella_moellendorffii_ 3
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 5
Citrus_clementina_v165 4
Citrus_sinensis_v154   (Sweet orange)   3
Thellungiella_halophila_v173 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   6
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   4
Glycine_max_v109   (Soybean)   4
Cucumis_sativus_v122   (Cucumber)   2
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   2
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   3
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 5
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   6
Aegilops_tauschii_22 4
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 2
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 1
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4
Oryza_sativa_v193   (Rice)   4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   8
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   4
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1
Physcomitrella_patens 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 2
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae_strain_10D_22 3
Cyanidioschyzon_merolae 3
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 3
Bigelowiella_natans_CCMP2755_22 8
Giardia_lamblia_2.3 6
Cyanophora_paradoxa_ 1
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 3
Albugo_laibachii_22 4
Pythium_iwayamai_DAOM_BR242034_22 4
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 3
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 4
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 3
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 2
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 9
Naegleria_gruberi_ 3
Trichomonas_vaginalis_ 5
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 14
Synechococcus_sp._PCC_7502 1
Acidimicrobium_ferrooxidans_DSM_10331 1
Modestobacter_marinus 2
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 1
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 1
Mycobacterium_sp._JLS 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_sp._FB24 1
Bifidobacterium_adolescentis_ATCC_15703 1
Deinococcus_geothermalis_DSM_11300 1
Clostridium_thermocellum_ATCC_27405 1
Desulfotomaculum_kuznetsovii_DSM_6115 1
Acetobacterium_woodii_DSM_1030 1
Syntrophothermus_lipocalidus_DSM_12680 1
Moorella_thermoacetica_ATCC_39073 1
Bacillus_atrophaeus_1942 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Dyadobacter_fermentans_DSM_18053 1
Bacteroides_helcogenes_P_36-108 2
Fluviicola_taffensis_DSM_16823 0
Flavobacteriaceae_bacterium_3519-10 1
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 3
Thermovirga_lienii_DSM_17291 1
Aminobacterium_colombiense_DSM_12261 1
Deferribacter_desulfuricans_SSM1 1
Mesotoga_prima_MesG1.Ag.4.2 2
Candidatus_Solibacter_usitatus_Ellin6076 1
Candidatus_Koribacter_versatilis_Ellin345 1
Candidatus_Nitrospira_defluvii 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1
Helicobacter_bizzozeronii_CIII-1 1
Desulfobacca_acetoxidans_DSM_11109 1
Syntrophus_aciditrophicus_SB 1
Geobacter_uraniireducens_Rf4 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 4
Stigmatella_aurantiaca_DW4/3-1 1
Chromobacterium_violaceum_ATCC_12472 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 0
Cupriavidus_metallidurans_CH34 1
Burkholderia_cenocepacia_HI2424 2
Verminephrobacter_eiseniae_EF01-2 1
Delftia_sp._Cs1-4 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Gallionella_capsiferriformans_ES-2 1
Methylovorus_sp._MP688 1
Parvularcula_bermudensis_HTCC2503 1
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_crescentus_NA1000 1
Caulobacter_segnis_ATCC_21756 1
Novosphingobium_sp._PP1Y 1
Acidiphilium_multivorum_AIU301 1
Polymorphum_gilvum_SL003B-26A1 1
Methylobacterium_chloromethanicum_CM4 1
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_medicae_WSM419 1
Agrobacterium_vitis_S4 1
Mesorhizobium_opportunistum_WSM2075 1
Rhodomicrobium_vannielii_ATCC_17100 1
Bradyrhizobium_sp._ORS_278 1
Cellvibrio_japonicus_Ueda107 2
Tolumonas_auensis_DSM_9187 1
Vibrio_harveyi_ATCC_BAA-1116 1
Marinomonas_sp._MWYL1 1
Chromohalobacter_salexigens_DSM_3043 1
Methylomonas_methanica_MC09 2
Xanthomonas_campestris_pv._campestris_str._B100 1
Nitrosococcus_halophilus_Nc4 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1
Pseudomonas_stutzeri_A1501 1
halophilic_archaeon_DL31 1
Methanosaeta_harundinacea_6Ac 1
Methanosarcina_acetivorans_C2A 0
Methanosphaerula_palustris_E1-9c 1
Thermococcus_sibiricus_MM_739 1
Pyrococcus_sp._ST04 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Halorubrum_lacusprofundi_ATCC_49239 1
Haloquadratum_walsbyi_DSM_16790 1
Halogeometricum_borinquense_DSM_11551 1
Haloferax_mediterranei_ATCC_33500 1
Haloferax_volcanii_DS2 1
Halalkalicoccus_jeotgali_B3 2
Methanocaldococcus_jannaschii_DSM_2661 1
Methanococcus_aeolicus_Nankai-3 1
Methanococcus_voltae_A3 1
Methanobrevibacter_sp._AbM4 1
Acholeplasma_laidlawii_PG-8A 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   9
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 5
Cryptococcus_neoformans_B-3501A_ 4
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 4
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 4
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 5
Aspergillus_fumigatus_A1163_ 4
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 4
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 4
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 3
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 4
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Oscillatoria_acuminata_PCC_6304 1
Frankia_sp._EuI1c 1
Streptomyces_davawensis_JCM_4913 1
Saccharothrix_espanaensis_DSM_44229 1
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_sp._JDM601 1
Mycobacterium_sp._KMS 2
Mycobacterium_sp._MCS 2
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_smegmatis_str._MC2_155 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Clostridium_thermocellum_DSM_1313 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Clostridium_sp._SY8519 1
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_B1_str._Okra 1
Clostridium_botulinum_A2_str._Kyoto 1
Leuconostoc_gelidum_JB7 1
Lactobacillus_johnsonii_N6.2 1
Lactobacillus_johnsonii_DPC_6026 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1
Streptococcus_pneumoniae_INV200 1
Streptococcus_pneumoniae_CGSP14 1
Streptococcus_pneumoniae_G54 1
Streptococcus_pneumoniae_D39 1
Streptococcus_pneumoniae_R6 1
Streptococcus_mutans_UA159 1
Listeria_monocytogenes_J1-220 1
Listeria_monocytogenes_ATCC_19117 1
Bacillus_subtilis_XF-1 1
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_cereus_biovar_anthracis_str._CI 2
Bacillus_cereus_G9842 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 2
Bacillus_cereus_ATCC_14579 1
Bacillus_anthracis_str._H9401 2
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._A2012 1
Chlorobium_phaeobacteroides_BS1 1
Bacteroides_fragilis_638R 0
Nonlabens_dokdonensis_DSW-6 0
Fusobacterium_nucleatum_subsp._animalis_4_8 1
Desulfobacula_toluolica_Tol2 0
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 2
Burkholderia_cenocepacia_AU_1054 2
Variovorax_paradoxus_B4 0
Caulobacter_crescentus_CB15 1
Phaeobacter_gallaeciensis_DSM_17395 1
Paracoccus_aminophilus_JCM_7686 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_oligotrophicum_S58 1
Vibrio_vulnificus_CMCP6 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1
Shewanella_baltica_OS223 1
Glaciecola_psychrophila_170 2
Edwardsiella_tarda_FL6-60 1
Pantoea_ananatis_LMG_5342 1
Pantoea_ananatis_AJ13355 1
Cronobacter_sakazakii_CMCC_45402 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1
Escherichia_coli_ETEC_H10407 1
Escherichia_coli_O55:H7_str._CB9615 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_putida_ND6 1
Pseudomonas_resinovorans_NBRC_106553 1
Methanomethylovorans_hollandica_DSM_15978 1
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 2
Haloquadratum_walsbyi_C23 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_69_3.1   (Western gorilla)   4
Pongo_abelii_69_2   (Sumatran orangutan)   3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   4
Rattus_norvegicus_69_3.4   (Norway rat)   4
Mus_musculus_69_38   (House mouse)   5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_69_1   (Giant panda)   3
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   3
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   4
Latimeria_chalumnae_69_1   (Coelacanth)   3
Gadus_morhua_69_1   (Atlantic cod)   2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5
Danio_rerio_69_9   (Zebrafish)   4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   4
Caenorhabditis_elegans_69_215   (Roundworm)   2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   4
Homo_sapiens__(NCBI_version)   (Human)   4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Encephalitozoon_cuniculi_(endoparasite) 2
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Acholeplasma_laidlawii_PG-8A_(duplicate) 1
NCBI_plasmid_sequences_(Plasmids) 24
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6
Protozoadb_2010_08_(Protozoadb) 58
STRING_v9.0.5_(STRING) 437
Uniprot_2018_03_genome 34395
NCBI_2017_08_genome 8626
TargetDB__(Targets) 8
PDB_chains_(SCOP_1.75)_(PDB) 2
Protein_Data_Bank_(all_PDB_sequenc) 11

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