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Domain combinations for _gap_,52540,48452,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
48452 - TPR-like
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Loxodonta_africana_76_3   (African savanna elephant)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Gallus_gallus_76_4   (Chicken)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Xenopus_laevis_   (African clawed frog)   3
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Danio_rerio_76_9   (Zebrafish)   2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   1
Acropora_digitifera_v1.0 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 1
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Punctularia_strigosozonata_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Postia_placenta_ 1
Daldinia_eschscholzii_EC12_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 0
Fusarium_graminearum_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_virens_Gv29-8_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 2
Didymella_exigua_CBS_183.55_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 7
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 0
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 1
Uncinocarpus_reesii_1704_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 0
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_flavus_NRRL3357_ 0
Penicillium_marneffei_ATCC_18224_ 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 0
Thecamonas_trahens_ATCC_50062_ 1
Cyanophora_paradoxa_ 2
Ectocarpus_siliculosus 3
Guillardia_theta_CCMP2712_v1.0_ 0
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 1
Synechococcus_sp._PCC_6312 0
Trichodesmium_erythraeum_IMS101 0
Geitlerinema_sp._PCC_7407 1
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
Nostoc_sp._PCC_7107 2
Nostoc_punctiforme_PCC_73102 2
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Catenulispora_acidiphila_DSM_44928 0
Stackebrandtia_nassauensis_DSM_44728 2
Frankia_sp._EAN1pec 0
Frankia_alni_ACN14a 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Thermomonospora_curvata_DSM_43183 0
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 0
Streptomyces_flavogriseus_ATCC_33331 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 4
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Amycolatopsis_mediterranei_U32 1
Microlunatus_phosphovorus_NM-1 0
Salinispora_arenicola_CNS-205 0
Verrucosispora_maris_AB-18-032 0
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Mycobacterium_chubuense_NBB4 0
Herpetosiphon_aurantiacus_DSM_785 3
Roseiflexus_sp._RS-1 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_geothermalis_DSM_11300 0
Oceanithermus_profundus_DSM_14977 1
Meiothermus_ruber_DSM_1279 1
Clostridium_tetani_E88 1
Bacillus_sp._JS 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_megaterium_DSM_319 1
Pelodictyon_phaeoclathratiforme_BU-1 0
Chlorobium_chlorochromatii_CaD3 0
Chlorobium_phaeobacteroides_DSM_266 1
Chloroherpeton_thalassium_ATCC_35110 1
Haliscomenobacter_hydrossis_DSM_1100 1
Candidatus_Amoebophilus_asiaticus_5a2 0
Thermanaerovibrio_acidaminovorans_DSM_6589 0
Treponema_azotonutricium_ZAS-9 0
Treponema_denticola_ATCC_35405 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfovibrio_africanus_str._Walvis_Bay 1
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 0
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Magnetococcus_marinus_MC-1 1
Rickettsia_bellii_OSU_85-389 0
Saccharophagus_degradans_2-40 1
Vibrio_sp._Ex25 0
Marinobacter_aquaeolei_VT8 0
Nitrosococcus_oceani_ATCC_19707 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_concilii_GP6 1
Methanosarcina_barkeri_str._Fusaro 0
Methanoregula_boonei_6A8 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Chroococcidiopsis_thermalis_PCC_7203 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 0
Cyanobacterium_stanieri_PCC_7202 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Frankia_sp._EuI1c 2
Frankia_sp._CcI3 0
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 5
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 0
Actinoplanes_friuliensis_DSM_7358 1
Nocardia_brasiliensis_ATCC_700358 0
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Sorangium_cellulosum_So0157-2 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Myxococcus_stipitatus_DSM_14675 0
Rickettsia_bellii_RML369-C 0
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 0
Vibrio_nigripulchritudo_VibrioScope 0
Pseudomonas_fluorescens_F113 0
Halovivax_ruber_XH-70 0
Halorhabdus_tiamatea_SARL4B 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Equus_caballus_69_2   (Horse)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
NCBI_plasmid_sequences_(Plasmids) 2
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 41
Uniprot_2018_03_genome 10287
NCBI_2017_08_genome 1430

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