SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,52540,75712 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
75712 - Rad50 coiled-coil Zn hook

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Tupaia_belangeri_76   (Northern tree shrew)   0
Pseudanabaena_sp._PCC_7367 0
Synechococcus_sp._PCC_7502 0
Gloeobacter_violaceus_PCC_7421 0
Kineococcus_radiotolerans_SRS30216 0
Dehalococcoides_ethenogenes_195 0
Dehalogenimonas_lykanthroporepellens_BL-DC-9 0
Sphaerobacter_thermophilus_DSM_20745 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Thermus_sp._CCB_US3_UF1 0
Thermoanaerobacterium_xylanolyticum_LX-11 0
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 0
Ammonifex_degensii_KC4 1
Gemmatimonas_aurantiaca_T-27 0
Thermotoga_lettingae_TMO 0
Sulfurihydrogenibium_sp._YO3AOP1 0
Sulfurihydrogenibium_azorense_Az-Fu1 0
Thermocrinis_albus_DSM_14484 0
Arcobacter_sp._L 0
Arcobacter_nitrofigilis_DSM_7299 0
Acidilobus_saccharovorans_345-15 0
Thermogladius_cellulolyticus_1633 0
Aeropyrum_pernix_K1 0
Thermosphaera_aggregans_DSM_11486 0
Metallosphaera_cuprina_Ar-4 0
Sulfolobus_tokodaii_str._7 0
Sulfolobus_solfataricus_P2 0
Sulfolobus_acidocaldarius_DSM_639 0
Thermofilum_sp._1910b 0
Caldivirga_maquilingensis_IC-167 0
Pyrobaculum_islandicum_DSM_4184 0
Thermoproteus_tenax_Kra_1 0
Methanohalobium_evestigatum_Z-7303 0
Methanoregula_boonei_6A8 0
Methanoplanus_petrolearius_DSM_11571 0
Archaeoglobus_fulgidus_DSM_4304 0
Thermococcus_barophilus_MP 0
Pyrococcus_sp._ST04 0
Pyrococcus_horikoshii_OT3 0
Halopiger_xanaduensis_SH-6 0
Halorubrum_lacusprofundi_ATCC_49239 0
Haloquadratum_walsbyi_DSM_16790 0
Halomicrobium_mukohataei_DSM_12286 0
Halorhabdus_utahensis_DSM_12940 0
Haloarcula_hispanica_ATCC_33960 0
Halobacterium_salinarum_R1 0
Halobacterium_sp._NRC-1 0
Methanothermus_fervidus_DSM_2088 0
Methanothermobacter_marburgensis_str._Marburg 0
Methanothermobacter_thermautotrophicus_str._Delta_H 0
Aciduliprofundum_boonei_T469 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Actinomyces_graevenitzii_C83_ 0
Dehalococcoides_mccartyi_GY50 0
Dehalococcoides_mccartyi_DCMB5 0
Dehalococcoides_sp._GT 0
Dehalococcoides_sp._VS 0
Dehalococcoides_sp._CBDB1 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 0
Thermoanaerobacterium_thermosaccharolyticum_M0795 0
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Pseudomonas_putida_DOT-T1E 0
Candidatus_Nitrososphaera_gargensis_Ga9.2 0
Caldisphaera_lagunensis_DSM_15908 0
Aeropyrum_camini_SY1_=_JCM_12091 0
Sulfolobus_islandicus_LAL14/1 0
Sulfolobus_islandicus_REY15A 0
Sulfolobus_islandicus_HVE10/4 0
Sulfolobus_islandicus_Y.G.57.14 0
Sulfolobus_islandicus_L.S.2.15 0
Sulfolobus_islandicus_M.16.27 0
Sulfolobus_islandicus_M.14.25 0
Sulfolobus_islandicus_M.16.4 0
Sulfolobus_islandicus_L.D.8.5 0
Sulfolobus_solfataricus_98/2 0
Sulfolobus_acidocaldarius_SUSAZ 0
Sulfolobus_acidocaldarius_Ron12/I 0
Sulfolobus_acidocaldarius_N8 0
Thermococcus_litoralis_DSM_5473 0
Pyrococcus_sp._NA2 0
Natronobacterium_gregoryi_SP2 0
Haloquadratum_walsbyi_C23 0
Natronomonas_moolapensis_8.8.11 0
Haloarcula_hispanica_N601 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Tupaia_belangeri_69   (Northern tree shrew)   0

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
UniProt__viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 1
NCBI_viral_sequences_(Viral) 0
Uniprot_2018_03_genome 96
NCBI_2017_08_genome 19

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]