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Domain combinations for _gap_,52540,_gap_,158702,_gap_,56672 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
158702 - Sec63 N-terminal domain-like
56672 - DNA/RNA polymerases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Oikopleura_dioica 1
Adineta_vaga 1
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Daphnia_pulex_   (Common water flea)   1
Meloidogyne_hapla_ 1
Amphimedon_queenslandica 1
Eucalyptus_grandis_v201   (Rose gum)   1
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   2
Fragaria_vesca_   (Wild strawberry)   1
Prunus_persica_v139   (Peach)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Aquilegia_coerulea_v195 1
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 1
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 4
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 0
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Setaria_italica_v164   (Foxtail millet)   1
Musa_acuminata_22   (Wild Malaysian banana)   1
Physcomitrella_patens 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 3
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_pusilla_CCMP1545_v3.0 1
Perkinsus_marinus_ATCC_50983_ 1
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 0

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
STRING_v9.0.5_(STRING) 9
Uniprot_2018_03_genome 3743
NCBI_2017_08_genome 224

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