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Domain combinations for _gap_,52540,_gap_,50998,50978 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
50998 - Quinoprotein alcohol dehydrogenase-like
50978 - WD40 repeat-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Papio_anubis_76   (Olive baboon)   0
Otolemur_garnettii_76_3   (Small-eared galago)   1
Mus_musculus_76_38   (House mouse)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Saccoglossus_kowalevskii_v3.0 0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_yakuba_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Strigamia_maritima_22 1
Acropora_digitifera_v1.0 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Proterospongia_sp._ATCC_50818_ 0
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 0
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   5
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 0
Dichomitus_squalens 3
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Aspergillus_zonatus_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_oryzae_RIB40_ 2
Penicillium_marneffei_ATCC_18224_ 1
Thecamonas_trahens_ATCC_50062_ 0
Tetrahymena_thermophila_SB210_1_ 0
Geitlerinema_sp._PCC_7407 1
Gloeocapsa_sp._PCC_7428 0
Gloeobacter_violaceus_PCC_7421 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7524 0
Rhodococcus_erythropolis_PR4 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Chamaesiphon_minutus_PCC_6605 1
Cyanothece_sp._ATCC_51142 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Anabaena_cylindrica_PCC_7122 1
Streptomyces_davawensis_JCM_4913 1
Amycolatopsis_orientalis_HCCB10007 1

Longest transcript per gene
Genome     Number
Otolemur_garnettii_69_3   (Small-eared galago)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Felis_catus_69   (Domestic cat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Danio_rerio_69_9   (Zebrafish)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
NCBI_plasmid_sequences_(Plasmids) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 10
Uniprot_2018_03_genome 2310
NCBI_2017_08_genome 155

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