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Domain combinations for _gap_,52540,_gap_,75553,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
75553 - Smc hinge domain
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Sorex_araneus_76_1   (European shrew)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_mojavensis_1.3 1
Sarcoptes_scabiei 1
Caenorhabditis_remanei_ 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Leptosphaeria_maculans_22 1
Trichophyton_verrucosum_HKI_0517_ 1
Aspergillus_flavus_NRRL3357_ 1
Pichia_stipitis_CBS_6054_ 1
Pichia_pastoris_GS115_ 1
Schizosaccharomyces_cryophilus_OY26_22 1
Thellungiella_halophila_v173 1
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   2
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   1
Aquilegia_coerulea_v195 1
Oryza_punctata_22 0
Oryza_nivara_22 3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Leishmania_mexicana_2.4 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_chabaudi_ 1
Symbiodinium_minutum_clade_B1_v1.2 1
Anabaena_sp._90 1
Geodermatophilus_obscurus_DSM_43160 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Neisseria_meningitidis_FAM18 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Plasmodium_falciparum_HB3_ 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._WH_8102 1

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Felis_catus_69   (Domestic cat)   1
Sorex_araneus_69_1   (European shrew)   1
Loxodonta_africana_69_3   (African savanna elephant)   1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Core_Eukaryotic_Genes_458_(CEGMA) 1
Protozoadb_2010_08_(Protozoadb) 5
STRING_v9.0.5_(STRING) 10
Uniprot_2018_03_genome 2567
TargetDB__(Targets) 1
NCBI_2017_08_genome 290

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