SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,52540,_gap_,75712,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
75712 - Rad50 coiled-coil Zn hook

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Ochotona_princeps_76   (American pika)   0
Ovis_aries_76_3.1   (Sheep)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Sorex_araneus_76_1   (European shrew)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Octopus_bimaculoides_280 0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_simulans_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Rhodnius_prolixus_22 0
Caenorhabditis_briggsae_2 1
Chlamydomonas_reinhardtii_4.0 1
Phytophthora_infestans_T30-4_ 1
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Leptolyngbya_sp._PCC_7376 0
Thermosynechococcus_elongatus_BP-1 0
Microcystis_aeruginosa_NIES-843 0
Chloroflexus_sp._MS-G 0
Chloroflexus_aggregans_DSM_9485 0
Staphylococcus_carnosus_subsp._carnosus_TM300 0
Staphylococcus_aureus_subsp._aureus_JH1 0
Staphylococcus_aureus 0
Salinibacter_ruber_M8 0
Rhodothermus_marinus_DSM_4252 0
Bacteroides_helcogenes_P_36-108 1

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Chamaesiphon_minutus_PCC_6605 0
Dactylococcopsis_salina_PCC_8305 0
Synechococcus_sp._JA-2-3B'a(2-13) 0
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._PCC_7002 0
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_8801 0
Stanieria_cyanosphaera_PCC_7437 0
Staphylococcus_aureus_ST228/18412 0
Staphylococcus_aureus_ST228/18341 0
Staphylococcus_aureus_ST228/16125 0
Staphylococcus_aureus_ST228/16035 0
Staphylococcus_aureus_ST228/15532 0
Staphylococcus_aureus_ST228/10497 0
Staphylococcus_aureus_ST228/10388 0
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_Mu3 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Staphylococcus_aureus_subsp._aureus_N315 0
Staphylococcus_aureus_subsp._aureus_Mu50 0
Salinibacter_ruber_DSM_13855 0
Rhodothermus_marinus_SG0.5JP17-172 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Ochotona_princeps_69   (American pika)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Sorex_araneus_69_1   (European shrew)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 559
TargetDB__(Targets) 0
NCBI_2017_08_genome 32

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