SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,52799,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52799 - (Phosphotyrosine protein) phosphatases II

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   14
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7
Papio_anubis_76   (Olive baboon)   6
Macaca_mulatta_76_1   (Rhesus monkey)   11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   11
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   5
Rattus_norvegicus_76_5.0   (Norway rat)   4
Mus_musculus_76_38   (House mouse)   5
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6
Cavia_porcellus_76_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_76_2   (Rabbit)   7
Ochotona_princeps_76   (American pika)   5
Tupaia_belangeri_76   (Northern tree shrew)   7
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   4
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_76_1   (Giant panda)   7
Canis_familiaris_76_3.1   (Dog)   5
Felis_catus_76_6.2   (Domestic cat)   4
Equus_caballus_76_2   (Horse)   4
Myotis_lucifugus_76_2.0   (Little brown bat)   7
Pteropus_vampyrus_76_1   (Large flying fox)   5
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   7
Procavia_capensis_76_1   (Cape rock hyrax)   6
Loxodonta_africana_76_3   (African savanna elephant)   5
Echinops_telfairi_76   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   4
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_76_1   (Coelacanth)   4
Lepisosteus_oculatus_76   (Spotted gar)   5
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4
Poecilia_formosa_76   (Amazon molly)   6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   10
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   6
Adineta_vaga 9
Octopus_bimaculoides_280 4
Crassostrea_gigas_22   (Pacific oyster)   4
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 3
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   3
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   7
Drosophila_grimshawi_1.3 5
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 6
Drosophila_suzukii 2
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   9
Drosophila_erecta_1.3 5
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_darlingi_22   (American malaria mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   4
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 2
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Pristionchus_pacificus_ 10
Meloidogyne_incognita_   (Southern root-knot nematode)   9
Meloidogyne_hapla_ 6
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 10
Caenorhabditis_brenneri_ 45
Caenorhabditis_remanei_ 39
Caenorhabditis_elegans_76_235   (Roundworm)   29
Caenorhabditis_briggsae_2 21
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 9
Echinococcus_granulosus_ 8
Taenia_solium_   (Pork tapeworm)   9
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   6
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 3
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 11
Monosiga_brevicollis_ 7
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 4
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 4
Phycomyces_blakesleeanus_ 3
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 0
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 3
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 2
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 2
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 2
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 2
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 4
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 3
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 2
Trametes_versicolor_v1.0 2
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 3
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 3
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 3
Trichoderma_atroviride_ 3
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 3
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 2
Septoria_musiva_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 2
Penicillium_marneffei_ATCC_18224_ 2
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 1
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 2
Saccharomyces_paradoxus_MIT 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 1
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 8
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 7
Dictyostelium_purpureum_ 5
Entamoeba_dispar_1.2 6
Entamoeba_invadens_1.2 9
Entamoeba_histolytica_1 7
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 10
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   6
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   2
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 4
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 1
Oryza_nivara_22 6
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 2
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 2
Bathycoccus_prasinos_ 2
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 8
Bigelowiella_natans_CCMP2755_22 4
Giardia_lamblia_2.3 4
Leishmania_mexicana_2.4 4
Leishmania_major_strain_Friedlin_ 4
Leishmania_infantum_JPCM5_2.4 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 6
Trypanosoma_vivax_ 2
Trypanosoma_cruzi_strain_CL_Brener 3
Trypanosoma_congolense_2.4 4
Trypanosoma_brucei_gambiense_v4.1 4
Trypanosoma_brucei_TREU927_v4.1 4
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 4
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 2
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 2
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 4
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 20
Naegleria_gruberi_ 5
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 5
Emiliania_huxleyi_CCMP1516_ 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1
Lactobacillus_brevis_ATCC_367 1
Nitrosococcus_halophilus_Nc4 1
Legionella_longbeachae_NSW150 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Erwinia_tasmaniensis_Et1/99 1
Erwinia_sp._Ejp617 1
Erwinia_pyrifoliae_Ep1/96 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   27
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 2
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 2
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 2
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 2
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 2
Saccharomyces_cerevisiae_LalvinQA23 2
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 2
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_RM11-1a 2
Saccharomyces_cerevisiae_RM11-1a_ 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Trypanosoma_brucei_Lister_427_v4.1 3
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1
Proteus_mirabilis_BB2000 1
Erwinia_pyrifoliae_DSM_12163 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   5
Rattus_norvegicus_69_3.4   (Norway rat)   5
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   5
Tupaia_belangeri_69   (Northern tree shrew)   7
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   6
Equus_caballus_69_2   (Horse)   3
Myotis_lucifugus_69_2.0   (Little brown bat)   7
Pteropus_vampyrus_69_1   (Large flying fox)   5
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   7
Procavia_capensis_69_1   (Cape rock hyrax)   6
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   4
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5
Danio_rerio_69_9   (Zebrafish)   6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   6
Caenorhabditis_elegans_69_215   (Roundworm)   26
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2
Arabidopsis_thaliana_10   (Thale cress)   1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   13
Homo_sapiens__(NCBI_version)   (Human)   7
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Loa_loa_v3.3_(Request)   (Eye worm)   4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   4
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
TargetDB__(Targets) 36
Protozoadb_2010_08_(Protozoadb) 95
STRING_v9.0.5_(STRING) 426
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 25
Uniprot_2018_03_genome 23560
NCBI_2017_08_genome 4110

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]