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Domain combinations for _gap_,53150,48334,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53150 - DNA repair protein MutS, domain II
48334 - DNA repair protein MutS, domain III
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Takifugu_rubripes_76_4   (Torafugu)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Onchocerca_volvulus_22 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Trichoplax_adhaerens_ 1
Rhizomucor_miehei_CAU432_ 1
Ustilago_maydis_ 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Melampsora_laricis-populina_ 1
Amanita_thiersii_Skay4041_v1.0 1
Galerina_marginata_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Trametes_versicolor_v1.0 2
Apiospora_montagnei_NRRL_25634_v1.0 1
Neurospora_crassa_OR74A_ 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 2
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Aspergillus_fumigatus_Af293 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_wentii_v1.0 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Dekkera_bruxellensis_CBS_2499_v2.0 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 1
Debaromyces_hansenii 1
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 1
Dictyostelium_discoideum 1
Selaginella_moellendorffii_ 2
Citrus_sinensis_v154   (Sweet orange)   1
Medicago_truncatula_   (Barrel medic)   1
Glycine_max_v109   (Soybean)   0
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   1
Manihot_esculenta_v147   (Cassava)   1
Vitis_vinifera_   (Wine grape)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Triticum_aestivum_22   (Bread wheat)   2
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   1
Musa_balbisiana   (Balbis banana)   0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_vulgaris_ 0
Bathycoccus_prasinos_ 1
Porphyridium_purpureum_02_2012 0
Thecamonas_trahens_ATCC_50062_ 1
Tetrahymena_thermophila_SB210_1_ 1
Thermaerobacter_marianensis_DSM_12885 0
Sulfurospirillum_deleyianum_DSM_6946 0
Sulfurospirillum_barnesii_SES-3 0
Arcobacter_sp._L 0
Arcobacter_nitrofigilis_DSM_7299 0
Arcobacter_butzleri_RM4018 0
Psychrobacter_sp._G 0
Psychrobacter_sp._PRwf-1 0
Psychrobacter_arcticus_273-4 0
Psychrobacter_cryohalolentis_K5 0

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Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb01_ 1
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Arcobacter_butzleri_7h1h 0
Arcobacter_butzleri_ED-1 0
Halovivax_ruber_XH-70 0

Longest transcript per gene
Genome     Number
Takifugu_rubripes_69_4   (Torafugu)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1

Others
Genome     Number
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 22
NCBI_2017_08_genome 182
Uniprot_2018_03_genome 5460
UniProt__viral_sequences_(Viral) 0

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