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Domain combinations for _gap_,53448,50370 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53448 - Nucleotide-diphospho-sugar transferases
50370 - Ricin B-like lectins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   31
Pan_troglodytes_76_2.1.4   (Chimpanzee)   14
Gorilla_gorilla_76_3.1   (Western gorilla)   16
Pongo_abelii_76_2   (Sumatran orangutan)   14
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   16
Macaca_mulatta_76_1   (Rhesus monkey)   20
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   20
Otolemur_garnettii_76_3   (Small-eared galago)   14
Microcebus_murinus_76_1   (Gray mouse lemur)   13
Rattus_norvegicus_76_5.0   (Norway rat)   14
Mus_musculus_76_38   (House mouse)   29
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   14
Cavia_porcellus_76_3   (Domestic guinea pig)   13
Oryctolagus_cuniculus_76_2   (Rabbit)   14
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   10
Sus_scrofa_76_10.2   (Pig)   18
Bos_taurus_76_3.1   (Cattle)   17
Ovis_aries_76_3.1   (Sheep)   13
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_76_1   (Giant panda)   14
Canis_familiaris_76_3.1   (Dog)   20
Felis_catus_76_6.2   (Domestic cat)   15
Equus_caballus_76_2   (Horse)   14
Myotis_lucifugus_76_2.0   (Little brown bat)   16
Pteropus_vampyrus_76_1   (Large flying fox)   14
Sorex_araneus_76_1   (European shrew)   5
Erinaceus_europaeus_76   (Western European hedgehog)   9
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   15
Echinops_telfairi_76   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   13
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   14
Ornithorhynchus_anatinus_76_5   (Platypus)   8
Saccoglossus_kowalevskii_v3.0 18
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   15
Anas_platyrhynchos_76_1.0   (Mallard)   8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   13
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   18
Anolis_carolinensis_76_2.0   (Green anole)   17
Xenopus_laevis_   (African clawed frog)   16
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   14
Latimeria_chalumnae_76_1   (Coelacanth)   13
Lepisosteus_oculatus_76   (Spotted gar)   26
Gadus_morhua_76_1   (Atlantic cod)   14
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10
Takifugu_rubripes_76_4   (Torafugu)   28
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   18
Oryzias_latipes_76_1   (Japanese medaka)   15
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   18
Poecilia_formosa_76   (Amazon molly)   22
Oreochromis_niloticus_76_1.0   (Nile tilapia)   25
Astyanax_mexicanus_76   (Mexican tetra)   17
Danio_rerio_76_9   (Zebrafish)   30
Oikopleura_dioica 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 22
Octopus_bimaculoides_280 10
Crassostrea_gigas_22   (Pacific oyster)   5
Lottia_gigantea_   (Owl limpet)   6
Helobdella_robusta_ 4
Capitella_sp._I_ 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   3
Nasonia_vitripennis_   (Jewel wasp)   5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   6
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   6
Drosophila_grimshawi_1.3 9
Drosophila_willistoni_1.3 9
Drosophila_pseudoobscura_2.13 10
Drosophila_persimilis_1.3 10
Drosophila_suzukii 6
Drosophila_yakuba_1.3 11
Drosophila_simulans_1.3 11
Drosophila_sechellia_1.3 10
Drosophila_melanogaster_76_5   (Fruit fly)   22
Drosophila_erecta_1.3 11
Drosophila_ananassae_1.3 9
Drosophila_virilis_1.2 9
Drosophila_mojavensis_1.3 9
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   14
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   12
Anopheles_darlingi_22   (American malaria mosquito)   5
Anopheles_gambiae_49_3j   (African malaria mosquito)   10
Tribolium_castaneum_3.0   (Red flour beetle)   7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   6
Strigamia_maritima_22 6
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 3
Onchocerca_volvulus_22 8
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9
Caenorhabditis_japonica_ 7
Caenorhabditis_brenneri_ 9
Caenorhabditis_remanei_ 5
Caenorhabditis_elegans_76_235   (Roundworm)   18
Caenorhabditis_briggsae_2 8
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   9
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 7
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 6
Monosiga_brevicollis_ 5
Perkinsus_marinus_ATCC_50983_ 4
Cryptosporidium_hominis 1
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 2
Toxoplasma_gondii_VEG 2
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 2
Symbiodinium_minutum_clade_B1_v1.2 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   25
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   22
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   11
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   12
Neospora_caninum_Nc-Liverpool_6.2 2

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   21
Pan_troglodytes_69_2.1.4   (Chimpanzee)   13
Gorilla_gorilla_69_3.1   (Western gorilla)   15
Pongo_abelii_69_2   (Sumatran orangutan)   14
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_69_3   (Small-eared galago)   14
Microcebus_murinus_69_1   (Gray mouse lemur)   13
Rattus_norvegicus_69_3.4   (Norway rat)   15
Mus_musculus_69_38   (House mouse)   18
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   9
Cavia_porcellus_69_3   (Domestic guinea pig)   13
Oryctolagus_cuniculus_69_2   (Rabbit)   13
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   10
Sus_scrofa_69_10.2   (Pig)   16
Bos_taurus_69_3.1   (Cattle)   17
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_69_1   (Giant panda)   14
Canis_familiaris_69_3.1   (Dog)   18
Felis_catus_69   (Domestic cat)   6
Equus_caballus_69_2   (Horse)   14
Myotis_lucifugus_69_2.0   (Little brown bat)   15
Pteropus_vampyrus_69_1   (Large flying fox)   14
Sorex_araneus_69_1   (European shrew)   5
Erinaceus_europaeus_69   (Western European hedgehog)   9
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   13
Echinops_telfairi_69   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_69_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   9
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   14
Ornithorhynchus_anatinus_69_5   (Platypus)   7
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   8
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   15
Anolis_carolinensis_69_2.0   (Green anole)   12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_69_1   (Coelacanth)   13
Gadus_morhua_69_1   (Atlantic cod)   14
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10
Takifugu_rubripes_69_4   (Torafugu)   18
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   15
Oryzias_latipes_69_1   (Japanese medaka)   11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   18
Oreochromis_niloticus_69_1.0   (Nile tilapia)   21
Danio_rerio_69_9   (Zebrafish)   20
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   13
Caenorhabditis_elegans_69_215   (Roundworm)   8

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   34
Homo_sapiens__(NCBI_version)   (Human)   21
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   17
Loa_loa_v3.3_(Request)   (Eye worm)   8
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7
Protozoadb_2010_08_(Protozoadb) 13
TargetDB__(Targets) 13
Protein_Data_Bank_(all_PDB_sequenc) 39
STRING_v9.0.5_(STRING) 524
Uniprot_2018_03_genome 23484
NCBI_2017_08_genome 7637

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