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Domain combinations for _gap_,53623,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53623 - MurD-like peptide ligases, catalytic domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Sus_scrofa_76_10.2   (Pig)   1
Vicugna_pacos_76_1   (Alpaca)   1
Equus_caballus_76_2   (Horse)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Saccoglossus_kowalevskii_v3.0 0
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 1
Drosophila_suzukii 0
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Sarcoptes_scabiei 0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Capsaspora_owczarzaki_ATCC_30864_ 0
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 0
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Punctularia_strigosozonata_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Acremonium_alcalophilumv_1.0 0
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_discoideum 0
Selaginella_moellendorffii_ 0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 0
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   4
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   4
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   2
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   2
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 2
Oryza_punctata_22 6
Oryza_nivara_22 2
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Ostreococcus_lucimarinus_CCE9901_ 0
Bathycoccus_prasinos_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Trypanosoma_congolense_2.4 1
Phaeodactylum_tricornutumCCAP_1055/1 0
Naegleria_gruberi_ 0
Gloeocapsa_sp._PCC_7428 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Coriobacterium_glomerans_PW2 1
Nakamurella_multipartita_DSM_44233 0
Frankia_alni_ACN14a 0
Saccharopolyspora_erythraea_NRRL_2338 1
Kribbella_flavida_DSM_17836 0
Propionibacterium_acnes_SK137 1
Microlunatus_phosphovorus_NM-1 0
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Corynebacterium_kroppenstedtii_DSM_44385 1
Corynebacterium_jeikeium_K411 1
Kytococcus_sedentarius_DSM_20547 0
Arthrobacter_aurescens_TC1 1
Arthrobacter_sp._Rue61a 1
Gardnerella_vaginalis_409-05 1
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 1
Bifidobacterium_bifidum_S17 1
Arcanobacterium_haemolyticum_DSM_20595 1
Herpetosiphon_aurantiacus_DSM_785 0
Chloroflexus_aggregans_DSM_9485 1
Deinococcus_deserti_VCD115 0
Thermaerobacter_marianensis_DSM_12885 0
Desulfosporosinus_orientis_DSM_765 1
Clostridium_novyi_NT 1
Lactobacillus_reuteri_DSM_20016 0
Lactobacillus_helveticus_DPC_4571 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_anthracis_str._A0248 1
Staphylococcus_aureus 1
Granulicella_tundricola_MP5ACTX9 0
Sorangium_cellulosum_'So_ce_56' 0
Corallococcus_coralloides_DSM_2259 0
Tistrella_mobilis_KA081020-065 1
Thiocystis_violascens_DSM_198 0
Francisella_sp._TX077308 0
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 0
Francisella_tularensis_subsp._tularensis_WY96-3418 0
Francisella_cf._novicida_3523 0
Francisella_novicida_U112 0
Methanocella_arvoryzae_MRE50 1
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanohalophilus_mahii_DSM_5219 1
Methanoregula_boonei_6A8 1
Thermoplasmatales_archaeon_BRNA1 1
Halorubrum_lacusprofundi_ATCC_49239 1
Haloferax_volcanii_DS2 1
Methanotorris_igneus_Kol_5 1
Methanocaldococcus_sp._FS406-22 1
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 1
methanocaldococcus_infernus_ME 1
Methanocaldococcus_jannaschii_DSM_2661 1
Methanothermococcus_okinawensis_IH1 1
Methanococcus_aeolicus_Nankai-3 1
Methanococcus_maripaludis_C5 1
Methanococcus_voltae_A3 1
Methanococcus_vannielii_SB 1
Methanothermus_fervidus_DSM_2088 1
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 2
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Cyanobacterium_aponinum_PCC_10605 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Propionibacterium_acnes_KPA171202 1
Propionibacterium_acidipropionici_ATCC_4875 1
Clavibacter_michiganensis_subsp._sepedonicus 1
Gardnerella_vaginalis_HMP9231 1
Gardnerella_vaginalis_ATCC_14019 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_thermophilum_RBL67 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Bifidobacterium_animalis_subsp._lactis_Bl12 1
Bifidobacterium_animalis_subsp._lactis_B420 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1
Bifidobacterium_animalis_subsp._lactis_V9 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1
Bifidobacterium_asteroides_PRL2011 1
Bifidobacterium_bifidum_PRL2010 1
Bifidobacterium_bifidum_BGN4 1
Clostridium_kluyveri_NBRC_12016 1
Lactobacillus_reuteri_TD1 0
Lactobacillus_reuteri_I5007 0
Lactobacillus_reuteri_JCM_1112 0
Lactobacillus_reuteri_SD2112 0
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._A2012 1
Staphylococcus_aureus_ST228/18412 1
Staphylococcus_aureus_ST228/18341 1
Staphylococcus_aureus_ST228/16125 1
Staphylococcus_aureus_ST228/16035 1
Staphylococcus_aureus_ST228/15532 1
Staphylococcus_aureus_ST228/10497 1
Staphylococcus_aureus_ST228/10388 1
Staphylococcus_aureus_subsp._aureus_CN1 1
Staphylococcus_aureus_subsp._aureus_71193 1
Singulisphaera_acidiphila_DSM_18658 0
Sorangium_cellulosum_So0157-2 0
Octadecabacter_arcticus_238 0
Francisella_tularensis_subsp._mediasiatica_FSC147 0
Francisella_tularensis_subsp._holarctica_F92 0
Francisella_tularensis_subsp._holarctica_FTNF002-00 0
Francisella_tularensis_subsp._holarctica_OSU18 0
Francisella_tularensis_subsp._holarctica_LVS 0
Francisella_tularensis_subsp._holarctica_FSC200 0
Francisella_tularensis_subsp._tularensis_TIGB03 0
Francisella_tularensis_subsp._tularensis_TI0902 0
Francisella_tularensis_subsp._tularensis_NE061598 0
Francisella_tularensis_subsp._tularensis_FSC198 0
Francisella_tularensis_subsp._tularensis_SCHU_S4 0
Francisella_cf._novicida_Fx1 0
Methanolobus_psychrophilus_R15 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1
Methanococcus_maripaludis_X1 1
Methanococcus_maripaludis_C6 1
Methanococcus_maripaludis_C7 1
Methanococcus_maripaludis_S2 1
Methanobacterium_sp._SWAN-1 1

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Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Sus_scrofa_69_10.2   (Pig)   1
Vicugna_pacos_69_1   (Alpaca)   1
Equus_caballus_69_2   (Horse)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 11
STRING_v9.0.5_(STRING) 55
Uniprot_2018_03_genome 3625
NCBI_2017_08_genome 909
TargetDB__(Targets) 2
Protein_Data_Bank_(all_PDB_sequenc) 4

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