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Domain combinations for _gap_,54171,_gap_,101936,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54171 - DNA-binding domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pinus_taeda   (Loblolly pine)   4
Medicago_truncatula_   (Barrel medic)   1
Glycine_max_v109   (Soybean)   1
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_glumaepatula_22 1
Oryza_punctata_22 1
Oryza_nivara_22 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   1

Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
STRING_v9.0.5_(STRING) 4
NCBI_2017_08_genome 24
Uniprot_2018_03_genome 390

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