SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,54236,_gap_,57850,57850,57850 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like
57850 - RING/U-box
57850 - RING/U-box
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Equus_caballus_76_2   (Horse)   1
Nasonia_vitripennis_   (Jewel wasp)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Rhodnius_prolixus_22 1

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Equus_caballus_69_2   (Horse)   1

Others
Genome     Number
NCBI_2017_08_genome 55
STRING_v9.0.5_(STRING) 4
Uniprot_2018_03_genome 612

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