SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,54575 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54575 - Ribosomal protein L31e

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Rhizomucor_miehei_CAU432_ 0
Ustilago_maydis_ 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Fomitiporia_mediterranea_v1.0 1
Leptosphaeria_maculans_22 1
Pyrenophora_teres_f._teres_22 0
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 3
Pinus_taeda   (Loblolly pine)   1
Eucalyptus_grandis_v201   (Rose gum)   1
Gossypium_raimondii_v221 1
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   1
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 2
Musa_balbisiana   (Balbis banana)   1
Bigelowiella_natans_CCMP2755_22 0
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 2
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 2
Paramecium_tetraurelia_ 2
Symbiodinium_minutum_clade_B1_v1.2 0
Sulfolobus_acidocaldarius_DSM_639 1

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Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb03_ 0
Histoplasma_capsulatum_G186AR 1
Trypanosoma_brucei_Lister_427_v4.1 2
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1

Longest transcript per gene
Genome     Number
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1

Others
Genome     Number
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
STRING_v9.0.5_(STRING) 7
Protozoadb_2010_08_(Protozoadb) 25
NCBI_2017_08_genome 132
Uniprot_2018_03_genome 564
TargetDB__(Targets) 3
Protein_Data_Bank_(all_PDB_sequenc) 4

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