SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,54980,54211,54980 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54980 - EF-G C-terminal domain-like
54211 - Ribosomal protein S5 domain 2-like
54980 - EF-G C-terminal domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Vicugna_pacos_76_1   (Alpaca)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Caenorhabditis_brenneri_ 1
Laccaria_bicolor_S238N-H82_ 1
Botrytis_cinerea_B05.10_ 0
Malus_domestica_v196   (Apple)   1
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Paramecium_tetraurelia_ 0
Streptomyces_violaceusniger_Tu_4113 0
Bifidobacterium_longum_subsp._longum_JDM301 0
Phaeobacter_gallaeciensis_2.10 0
Ruegeria_pomeroyi_DSS-3 0
Rhodobacter_capsulatus_SB_1003 0
Sinorhizobium_fredii_NGR234 0
Sinorhizobium_medicae_WSM419 0
Sinorhizobium_meliloti_AK83 0
Rhizobium_etli_CIAT_652 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Saccharomyces_cerevisiae_FostersO 0
Cyanothece_sp._ATCC_51142 1
Streptomyces_rapamycinicus_NRRL_5491 0
Bifidobacterium_longum_NCC2705 0
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._longum_KACC_91563 0
Bifidobacterium_longum_subsp._longum_BBMN68 0
Bifidobacterium_longum_subsp._longum_F8 0
Bifidobacterium_longum_subsp._longum_JCM_1217 0
Enterococcus_faecium_Aus0085 1
Phaeobacter_gallaeciensis_DSM_17395 0
Phaeobacter_gallaeciensis_DSM_26640 0
Leisingera_methylohalidivorans_DSM_14336 0
Sinorhizobium_fredii_USDA_257 0
Sinorhizobium_fredii_HH103 0
Sinorhizobium_meliloti_2011 0
Sinorhizobium_meliloti_GR4 0
Sinorhizobium_meliloti_Rm41 0
Sinorhizobium_meliloti_SM11 0
Sinorhizobium_meliloti_BL225C 0
Sinorhizobium_meliloti_1021 0
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Vicugna_pacos_69_1   (Alpaca)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0

Others
Genome     Number
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Malus_x_domestica_(Duplicate)   (Apple)   1
NCBI_plasmid_sequences_(Plasmids) 0
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 4
Uniprot_2018_03_genome 468
NCBI_2017_08_genome 67

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]