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Domain combinations for _gap_,55068 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55068 - Peptide methionine sulfoxide reductase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rattus_norvegicus_76_5.0   (Norway rat)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Danio_rerio_76_9   (Zebrafish)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Capitella_sp._I_ 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Drosophila_suzukii 0
Proterospongia_sp._ATCC_50818_ 1
Sphaeroforma_arctica_JP610_ 1
Ustilago_maydis_ 1
Microbotryum_violaceum_22 1
Verticillium_albo-atrum_VaMs.102_ 1
Leptosphaeria_maculans_22 1
Ashbya_gossypii_ATCC_10895_ 1
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   1
Eucalyptus_grandis_v201   (Rose gum)   1
Gossypium_raimondii_v221 6
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   10
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   3
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 1
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 0
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 1
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 1
Physcomitrella_patens 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 1
Cyanophora_paradoxa_ 1
Trypanosoma_congolense_2.4 1
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 1
Phytophthora_infestans_T30-4_ 0
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 1
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Symbiodinium_minutum_clade_B1_v1.2 1
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 2
Eggerthella_sp._YY7918 0
Carnobacterium_sp._17-4 1
Carnobacterium_sp._WN1359 1
Enterococcus_hirae_ATCC_9790 1
Enterococcus_faecium_Aus0004 2
Oenococcus_oeni_PSU-1 1
Leuconostoc_sp._C2 1
Leuconostoc_kimchii_IMSNU_11154 1
Leuconostoc_gasicomitatum_LMG_18811 1
Lactobacillus_casei_ATCC_334 1
Lactobacillus_rhamnosus_Lc_705 1
Lactobacillus_plantarum_JDM1 1
Pediococcus_claussenii_ATCC_BAA-344 1
Salinibacter_ruber_M8 1
Cytophaga_hutchinsonii_ATCC_33406 1
Haliangium_ochraceum_DSM_14365 1
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Collimonas_fungivorans_Ter331 1
Cellvibrio_japonicus_Ueda107 0
Pseudomonas_stutzeri_A1501 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Neospora_caninum_Nc-Liverpool_6.2 1
Cyanobium_gracile_PCC_6307 1
Corynebacterium_diphtheriae_CDCE_8392 1
Carnobacterium_maltaromaticum_LMA28 1
Enterococcus_mundtii_QU_25 1
Enterococcus_casseliflavus_EC20 1
Enterococcus_faecium_Aus0085 1
Enterococcus_faecium_NRRL_B-2354 1
Enterococcus_faecium_DO 2
Leuconostoc_carnosum_JB16 1
Leuconostoc_gelidum_JB7 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1
Lactobacillus_casei_LOCK919 1
Lactobacillus_casei_W56 1
Lactobacillus_casei_LC2W 1
Lactobacillus_casei_BD-II 1
Lactobacillus_casei_BL23 1
Lactobacillus_casei_str._Zhang 1
Lactobacillus_rhamnosus_LOCK908 1
Lactobacillus_rhamnosus_LOCK900 1
Lactobacillus_rhamnosus_ATCC_8530 1
Lactobacillus_rhamnosus_GG 1
Lactobacillus_rhamnosus_GG 1
Lactobacillus_plantarum_16 1
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1
Lactobacillus_plantarum_WCFS1 1
Salinibacter_ruber_DSM_13855 0
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_MSHR346 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Pseudomonas_putida_S16 1

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Longest transcript per gene
Genome     Number
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Malus_x_domestica_(Duplicate)   (Apple)   3
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
Protein_Data_Bank_(all_PDB_sequenc) 4
Protozoadb_2010_08_(Protozoadb) 2
STRING_v9.0.5_(STRING) 28
Uniprot_2018_03_genome 1869
NCBI_2017_08_genome 1910

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