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Domain combinations for _gap_,55486,50156 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55486 - Metalloproteases ("zincins"), catalytic domain
50156 - PDZ domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Punctularia_strigosozonata_v1.0 1
Trichoderma_virens_Gv29-8_ 1
Aspergillus_versicolor_v1.0 1
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Synechococcus_sp._CC9311 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 0
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Sulfobacillus_acidophilus_DSM_10332 2
Chloroherpeton_thalassium_ATCC_35110 2
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 1
Niastella_koreensis_GR20-10 1
Flexibacter_litoralis_DSM_6794 2
Marivirga_tractuosa_DSM_4126 1
Fibrella_aestuarina 1
Leadbetterella_byssophila_DSM_17132 1
Dyadobacter_fermentans_DSM_18053 2
Spirosoma_linguale_DSM_74 2
Pedobacter_saltans_DSM_12145 1
Solitalea_canadensis_DSM_3403 2
Pedobacter_heparinus_DSM_2366 1
Sphingobacterium_sp._21 1
Fluviicola_taffensis_DSM_16823 1
Zunongwangia_profunda_SM-A87 2
Krokinobacter_sp._4H-3-7-5 1
Gramella_forsetii_KT0803 2
Lacinutrix_sp._5H-3-7-4 1
Maribacter_sp._HTCC2170 1
Robiginitalea_biformata_HTCC2501 2
Croceibacter_atlanticus_HTCC2559 1
Zobellia_galactanivorans 2
Muricauda_ruestringensis_DSM_13258 1
Cellulophaga_algicola_DSM_14237 2
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_columnare_ATCC_49512 1
Flavobacterium_johnsoniae_UW101 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Candidatus_Chloracidobacterium_thermophilum_B 2
Acidithiobacillus_ferrivorans_SS3 1
Acidithiobacillus_caldus_SM-1 0
Acidithiobacillus_ferrooxidans_ATCC_53993 0
Bacteriovorax_marinus_SJ 1
Haliangium_ochraceum_DSM_14365 1
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 2
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Thauera_sp._MZ1T 1
Azoarcus_sp._KH32C 1
Azoarcus_sp._BH72 1
Aromatoleum_aromaticum_EbN1 1
Dechlorosoma_suillum_PS 1
Pseudogulbenkiania_sp._NH8B 1
Laribacter_hongkongensis_HLHK9 1
Chromobacterium_violaceum_ATCC_12472 1
Neisseria_meningitidis_alpha14 1
Neisseria_meningitidis_FAM18 1
Neisseria_lactamica_020-06 1
Neisseria_gonorrhoeae_NCCP11945 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
beta_proteobacterium_CB 1
Methylibium_petroleiphilum_PM1 1
Thiomonas_arsenitoxydans 1
Thiomonas_intermedia_K12 1
Rubrivivax_gelatinosus_IL144 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_rhizoxinica_HKI_454 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 1
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 1
Burkholderia_sp._RPE64 1
Burkholderia_sp._CCGE1002 1
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 1
Alicycliphilus_denitrificans_K601 1
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Rhodoferax_ferrireducens_T118 1
Acidovorax_ebreus_TPSY 1
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Comamonas_testosteroni_CNB-2 0
Herminiimonas_arsenicoxydans 1
Collimonas_fungivorans_Ter331 1
Janthinobacterium_sp._Marseille 1
Herbaspirillum_seropedicae_SmR1 1
Pusillimonas_sp._T7-7 1
Taylorella_asinigenitalis_MCE3 1
Taylorella_equigenitalis_MCE9 1
Bordetella_petrii_DSM_12804 1
Bordetella_avium_197N 1
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 1
Bordetella_bronchiseptica_RB50 1
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 1
Methylovorus_sp._MP688 0
Methylovorus_glucosetrophus_SIP3-4 0
Methylobacillus_flagellatus_KT 1
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_crescentus_NA1000 1
Novosphingobium_sp._PP1Y 1
Sphingomonas_wittichii_RW1 1
Hirschia_baltica_ATCC_49814 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Idiomarina_loihiensis_L2TR 2
Ferrimonas_balearica_DSM_9799 2
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 0
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 1
Shewanella_violacea_DSS12 1
Shewanella_frigidimarina_NCIMB_400 2
Shewanella_putrefaciens_CN-32 2
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_atlantica_T6c 1
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_sp._4H-3-7+YE-5 1
Glaciecola_nitratireducens_FR1064 1
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Kangiella_koreensis_DSM_16069 1
Alcanivorax_borkumensis_SK2 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_albilineans_GPE_PC73 1
Halothiobacillus_neapolitanus_c2 1
Allochromatium_vinosum_DSM_180 1
Thiocystis_violascens_DSM_198 1
Nitrosococcus_watsonii_C-113 1
Nitrosococcus_halophilus_Nc4 1
Nitrosococcus_oceani_ATCC_19707 1
gamma_proteobacterium_HdN1 1
Psychrobacter_sp._G 0
Psychrobacter_sp._PRwf-1 1
Psychrobacter_arcticus_273-4 0
Psychrobacter_cryohalolentis_K5 0
Moraxella_catarrhalis_RH4 1
Acinetobacter_oleivorans_DR1 1
Acinetobacter_calcoaceticus_PHEA-2 1
Acinetobacter_baumannii_ATCC_17978 1
Acinetobacter_sp._ADP1 1
Thiomicrospira_crunogena_XCL-2 1
Thioalkalimicrobium_cyclicum_ALM1 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 1

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 1
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Cyanobium_gracile_PCC_6307 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 0
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._CC9902 1
Synechococcus_sp._RCC307 1
Synechococcus_sp._CC9605 1
Synechococcus_sp._WH_8102 1
Synechococcus_sp._WH_7803 1
Synechococcus_sp._PCC_7002 1
Synechococcus_elongatus_PCC_6301 1
Prochlorococcus_marinus_str._MIT_9313 1
Prochlorococcus_marinus_str._MIT_9303 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 0
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Sulfobacillus_acidophilus_TPY 2
Emticicia_oligotrophica_DSM_17448 1
Psychroflexus_torquis_ATCC_700755 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Acidithiobacillus_ferrooxidans_ATCC_23270 0
Anaeromyxobacter_sp._K 2
Anaeromyxobacter_dehalogenans_2CP-C 2
Myxococcus_stipitatus_DSM_14675 1
Neisseria_meningitidis_WUE_2594 1
Neisseria_meningitidis_G2136 1
Neisseria_meningitidis_M04-240196 1
Neisseria_meningitidis_M01-240149 1
Neisseria_meningitidis_NZ-05/33 1
Neisseria_meningitidis_M01-240355 1
Neisseria_meningitidis_8013 1
Neisseria_meningitidis_053442 1
Neisseria_meningitidis_Z2491 1
Neisseria_meningitidis_alpha710 1
Neisseria_meningitidis_MC58 1
Neisseria_gonorrhoeae_TCDC-NG08107 1
Neisseria_gonorrhoeae_FA_1090 1
Candidatus_Kinetoplastibacterium_desouzaii_TCC079E 1
Candidatus_Kinetoplastibacterium_crithidii_(ex_Angomonas_deanei_ATCC_30255) 1
Candidatus_Kinetoplastibacterium_crithidii_TCC036E 1
Burkholderia_phenoliruptrix_BR3459a 1
Pandoraea_pnomenusa_3kgm 1
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_MSHR346 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_cepacia_GG4 1
Alicycliphilus_denitrificans_BC 1
Taylorella_asinigenitalis_14/45 1
Taylorella_equigenitalis_14/56 1
Taylorella_equigenitalis_ATCC_35865 1
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_parapertussis_Bpp5 1
Bordetella_bronchiseptica_MO149 1
Bordetella_bronchiseptica_253 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Caulobacter_crescentus_CB15 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Idiomarina_loihiensis_GSL_199 2
Shewanella_sp._W3-18-1 2
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 2
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_str._'English_Channel_615' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'English_Channel_673' 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1
Alteromonas_macleodii_str._'Black_Sea_11' 1
Alteromonas_macleodii_ATCC_27126 1
Alcanivorax_dieselolei_B5 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Thioflavicoccus_mobilis_8321 1
Acinetobacter_genomosp._13TU__RUH2624 1
Acinetobacter_sp.__SH024 1
Acinetobacter_calcoaceticus_ruh2202 1
Acinetobacter_baumannii_ZW85-1 1
Acinetobacter_baumannii_TYTH-1 1
Acinetobacter_baumannii_BJAB0868 1
Acinetobacter_baumannii_BJAB0715 1
Acinetobacter_baumannii_BJAB07104 1
Acinetobacter_baumannii_TCDC-AB0715 1
Acinetobacter_baumannii_D1279779 1
Acinetobacter_baumannii_MDR-TJ 1
Acinetobacter_baumannii_1656-2 1
Acinetobacter_baumannii__ATCC_19606 1
Acinetobacter_baumannii_AB307-0294 1
Acinetobacter_baumannii_AYE 1
Acinetobacter_baumannii_SDF 1
Acinetobacter_baumannii_MDR-ZJ06 1
Acinetobacter_baumannii_AB0057 1
Acinetobacter_baumannii_ACICU 1
Acinetobacter_radioresistens__SH164 1
Acinetobacter_junii__SH205 1
Acinetobacter_johnsonii__SH046 1
Acinetobacter_lwoffii__SH145 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 13
STRING_v9.0.5_(STRING) 159
Uniprot_2018_03_genome 19482
NCBI_2017_08_genome 9948
Protein_Data_Bank_(all_PDB_sequenc) 1

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