SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,55486,89260 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55486 - Metalloproteases ("zincins"), catalytic domain
89260 - Collagen-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Monosiga_brevicollis_ 1
Microcystis_aeruginosa_NIES-843 0
Streptosporangium_roseum_DSM_43021 1
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Vibrio_sp._Ex25 0
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 1
Vibrio_furnissii_NCTC_11218 1
Vibrio_vulnificus_MO6-24/O 1
Vibrio_cholerae_O395 1
Shewanella_violacea_DSS12 0
Rhodanobacter_denitrificans 0

Strains
Genome     Number
Myxococcus_stipitatus_DSM_14675 0
Simiduia_agarivorans_SA1_=_DSM_21679 0
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_vulnificus_YJ016 1
Vibrio_cholerae_LMA3984-4 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1

Others
Genome     Number
NCBI_2017_08_genome 955
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 8
Uniprot_2018_03_genome 1092

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