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Domain combinations for _gap_,55785,47384,55874,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55785 - PYP-like sensor domain (PAS domain)
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Sporisorium_reilianum_22 0
Mixia_osmundae_IAM_14324_v1.0 0
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 0
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 0
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Dothistroma_septosporum 0
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Spizellomyces_punctatus_DAOM_BR117_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Selaginella_moellendorffii_ 0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Malus_domestica_v196   (Apple)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Physcomitrella_patens 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Thecamonas_trahens_ATCC_50062_ 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 1
Microcoleus_sp._PCC_7113 0
Cyanothece_sp._PCC_8802 0
Gloeocapsa_sp._PCC_7428 0
Nostoc_punctiforme_PCC_73102 0
Eggerthella_lenta_DSM_2243 0
Frankia_sp._EAN1pec 0
Actinoplanes_sp._SE50/110 1
Dehalobacter_sp._DCA 1
Cyclobacterium_marinum_DSM_745 0
Isosphaera_pallida_ATCC_43644 0
Planctomyces_limnophilus_DSM_3776 0
Rhodopirellula_baltica_SH_1 0
Opitutus_terrae_PB90-1 0
Thermanaerovibrio_acidaminovorans_DSM_6589 1
Spirochaeta_smaragdinae_DSM_11293 1
Spirochaeta_caldaria_DSM_7334 0
Spirochaeta_africana_DSM_8902 1
Deferribacter_desulfuricans_SSM1 0
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1
Candidatus_Saccharimonas_aalborgensis 1
Sulfurimonas_denitrificans_DSM_1251 0
Desulfobacterium_autotrophicum_HRM2 0
Desulfovibrio_magneticus_RS-1 0
Desulfovibrio_salexigens_DSM_2638 0
Geobacter_sulfurreducens_KN400 0
Haliangium_ochraceum_DSM_14365 0
Ralstonia_eutropha_JMP134 0
Cupriavidus_taiwanensis_LMG_19424 0
Burkholderia_glumae_BGR1 0
Achromobacter_xylosoxidans 0
Nitrosomonas_sp._Is79A3 0
Magnetococcus_marinus_MC-1 0
Asticcacaulis_excentricus_CB_48 0
Maricaulis_maris_MCS10 0
Pseudovibrio_sp._FO-BEG1 0
Azospirillum_lipoferum_4B 1
Azospirillum_brasilense_Sp245 0
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_populi_BJ001 1
Sinorhizobium_medicae_WSM419 0
Sinorhizobium_meliloti_AK83 0
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Agrobacterium_tumefaciens_str._C58 0
Agrobacterium_sp._H13-3 0
Hyphomicrobium_denitrificans_ATCC_51888 0
Aeromonas_veronii_B565 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Vibrio_sp._Ex25 0
Vibrio_parahaemolyticus_RIMD_2210633 0
Shewanella_loihica_PV-4 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_amazonensis_SB2B 0
Colwellia_psychrerythraea_34H 0
Pseudoalteromonas_atlantica_T6c 0
Pseudoalteromonas_haloplanktis_TAC125 0
Glaciecola_sp._4H-3-7+YE-5 0
Glaciecola_nitratireducens_FR1064 0
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 0
Pseudoxanthomonas_suwonensis_11-1 0
Stenotrophomonas_maltophilia_K279a 0
Allochromatium_vinosum_DSM_180 2
Coxiella_burnetii_Dugway_5J108-111 0
gamma_proteobacterium_HdN1 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_putida_F1 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_fluorescens_SBW25 0
Pseudomonas_aeruginosa_UCBPP-PA14 0
Pseudomonas_sp._VLB120 0
Psychrobacter_sp._G 0
Psychrobacter_cryohalolentis_K5 0
Halomicrobium_mukohataei_DSM_12286 2
Halorhabdus_utahensis_DSM_12940 1

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Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Chroococcidiopsis_thermalis_PCC_7203 0
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Synechococcus_sp._PCC_7002 0
Oscillatoria_acuminata_PCC_6304 0
Cyanothece_sp._PCC_8801 0
Singulisphaera_acidiphila_DSM_18658 0
Bdellovibrio_exovorus_JSS 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 3
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Geobacter_sulfurreducens_PCA 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Sinorhizobium_fredii_HH103 0
Sinorhizobium_meliloti_2011 0
Sinorhizobium_meliloti_GR4 0
Sinorhizobium_meliloti_Rm41 0
Sinorhizobium_meliloti_SM11 0
Sinorhizobium_meliloti_BL225C 0
Sinorhizobium_meliloti_1021 0
Rhizobium_tropici_CIAT_899 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Hyphomicrobium_denitrificans_1NES1 0
Aeromonas_hydrophila_ML09-119 0
Vibrio_parahaemolyticus_BB22OP 0
Glaciecola_psychrophila_170 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_615' 0
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Stenotrophomonas_maltophilia_D457 0
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Coxiella_burnetii_CbuK_Q154 0
Coxiella_burnetii_CbuG_Q212 0
Coxiella_burnetii_RSA_331 0
Coxiella_burnetii_RSA_493 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_ND6 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 0
Halorhabdus_tiamatea_SARL4B 1

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Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 16
Uniprot_2018_03_genome 3066
NCBI_2017_08_genome 256
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 0

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