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Domain combinations for _gap_,55785,55785,55785,55073,141868 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)
55073 - Nucleotide cyclase
141868 - EAL domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Anabaena_variabilis_ATCC_29413 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Saccharopolyspora_erythraea_NRRL_2338 2
[Cellvibrio]_gilvus_ATCC_13127 1
Deinococcus_proteolyticus_MRP 1
Thermincola_potens_JR 1
Exiguobacterium_sp._MH3 0
Exiguobacterium_sibiricum_255-15 0
Anoxybacillus_flavithermus_WK1 1
Turneriella_parva_DSM_21527 1
Terriglobus_roseus_DSM_18391 1
uncultured_Sulfuricurvum_sp._RIFRC-1 0
Sulfuricurvum_kujiense_DSM_16994 1
Sulfurovum_sp._NBC37-1 1
Desulfarculus_baarsii_DSM_2075 1
Desulfohalobium_retbaense_DSM_5692 1
Geobacter_metallireducens_GS-15 1
Pelobacter_carbinolicus_DSM_2380 1
Dechloromonas_aromatica_RCB 1
Azoarcus_sp._KH32C 1
Dechlorosoma_suillum_PS 1
Pseudogulbenkiania_sp._NH8B 2
Laribacter_hongkongensis_HLHK9 2
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Rubrivivax_gelatinosus_IL144 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 1
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_sp._RPE64 1
Burkholderia_sp._CCGE1002 1
Alicycliphilus_denitrificans_K601 1
Acidovorax_sp._KKS102 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Comamonas_testosteroni_CNB-2 1
Sideroxydans_lithotrophicus_ES-1 1
Gallionella_capsiferriformans_ES-2 2
Methylovorus_sp._MP688 2
Methylovorus_glucosetrophus_SIP3-4 2
Methylobacillus_flagellatus_KT 1
Magnetococcus_marinus_MC-1 1
Rhodobacter_capsulatus_SB_1003 1
Magnetospirillum_magneticum_AMB-1 1
Acidiphilium_multivorum_AIU301 1
Acidiphilium_cryptum_JF-5 1
Rhizobium_etli_CIAT_652 2
Rhodopseudomonas_palustris_BisA53 1
Nitrobacter_hamburgensis_X14 1
Bradyrhizobium_japonicum_USDA_110 2
Bradyrhizobium_sp._ORS_278 1
Psychromonas_ingrahamii_37 3
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 2
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 1
Shewanella_violacea_DSS12 1
Shewanella_frigidimarina_NCIMB_400 1
Shewanella_putrefaciens_CN-32 2
Glaciecola_nitratireducens_FR1064 1
Hahella_chejuensis_KCTC_2396 1
Alcanivorax_borkumensis_SK2 1
Methylomicrobium_alcaliphilum 1
Methylomonas_methanica_MC09 2
Methylococcus_capsulatus_str._Bath 1
Pseudoxanthomonas_suwonensis_11-1 1
Stenotrophomonas_maltophilia_K279a 1
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 2
Xanthomonas_campestris_pv._campestris_str._B100 1
Spiribacter_sp._UAH-SP71 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Thioalkalivibrio_sp._K90mix 1
Halorhodospira_halophila_SL1 1
Thiocystis_violascens_DSM_198 0
Legionella_pneumophila_str._Corby 1
gamma_proteobacterium_HdN1 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Serratia_sp._AS12 1
Serratia_plymuthica_AS9 1
Pantoea_vagans_C9-1 1
Pantoea_ananatis_LMG_20103 1
Cronobacter_turicensis_z3032 1
Cronobacter_sakazakii_ES15 1
Shigella_sonnei_Ss046 1
Shigella_boydii_CDC_3083-94 1
Escherichia_fergusonii_ATCC_35469 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1
Enterobacter_sp._R4-368 1
Enterobacter_sp._638 1
Enterobacter_asburiae_LF7a 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1
Citrobacter_koseri_ATCC_BAA-895 1
Pseudomonas_aeruginosa_UCBPP-PA14 1

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Strains
Genome     Number
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanobacterium_stanieri_PCC_7202 1
Amycolatopsis_orientalis_HCCB10007 1
Exiguobacterium_antarcticum_B7 0
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 3
Alicycliphilus_denitrificans_BC 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 2
Rhizobium_etli_CFN_42 2
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_oligotrophicum_S58 1
Bradyrhizobium_japonicum_USDA_6 1
Shewanella_sp._W3-18-1 2
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 2
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_campestris_pv._raphani_756C 1
Legionella_pneumophila_str._Paris 1
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1
Legionella_pneumophila_2300/99_Alcoy 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1
Serratia_sp._AS13 1
Serratia_plymuthica_S13 1
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_WW4 1
Serratia_liquefaciens_ATCC_27592 1
Pantoea_ananatis_LMG_5342 1
Pantoea_ananatis_PA13 1
Cronobacter_sakazakii_CMCC_45402 1
Cronobacter_sakazakii_SP291 1
Cronobacter_sakazakii_ATCC_BAA-894 1
Shigella_sonnei_53G 1
Escherichia_coli_E24377A 1
Escherichia_coli_E._coli_PMV-1 1
Escherichia_coli_JJ1886 1
Escherichia_coli_LY180 1
Escherichia_coli_APEC_O78 1
Escherichia_coli_O7:K1_str._CE10 1
Escherichia_coli_O104:H4_str._2009EL-2050 1
Escherichia_coli_O104:H4_str._2009EL-2071 1
Escherichia_coli_O104:H4_str._2011C-3493 1
Escherichia_coli_NA114 1
Escherichia_coli_P12b 1
Escherichia_coli_str._'clone_D_i2' 1
Escherichia_coli_str._'clone_D_i14' 1
Escherichia_coli_UM146 1
Escherichia_coli_IHE3034 1
Escherichia_coli_UMNK88 1
Escherichia_coli_O83:H1_str._NRG_857C 1
Escherichia_coli_ABU_83972 1
Escherichia_coli_KO11FL 1
Escherichia_coli_KO11FL 1
Escherichia_coli_LF82 1
Escherichia_coli_ED1a 1
Escherichia_coli_IAI39 1
Escherichia_coli_UMN026 1
Escherichia_coli_55989 1
Escherichia_coli_S88 1
Escherichia_coli_IAI1 1
Escherichia_coli_W 1
Escherichia_coli_W 1
Escherichia_coli_DH1 1
Escherichia_coli_DH1 1
Escherichia_coli_ATCC_8739 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_SMS-3-5 1
Escherichia_coli_SE15 1
Escherichia_coli_SE11 1
Escherichia_coli_APEC_O1 1
Escherichia_coli_O103:H2_str._12009 1
Escherichia_coli_UTI89 1
Escherichia_coli_536 1
Escherichia_coli_ETEC_H10407 1
Escherichia_coli_O55:H7_str._RM12579 1
Escherichia_coli_O55:H7_str._CB9615 1
Escherichia_coli_CFT073 1
Escherichia_coli_O111:H-_str._11128 1
Escherichia_coli_O157:H7_str._EDL933 1
Escherichia_coli_str._K-12_substr._MDS42 1
Escherichia_coli_BW2952 1
Escherichia_coli_str._K-12_substr._MG1655 1
Escherichia_coli_str._K-12_substr._W3110 1
Escherichia_coli_str._K-12_substr._DH10B 1
Escherichia_coli_B_str._REL606 1
Enterobacter_cloacae_SCF1 1
Enterobacter_cloacae_EcWSU1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 12
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 124
Uniprot_2018_03_genome 35586
NCBI_2017_08_genome 13733

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