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Domain combinations for _gap_,56519,56601,_gap_,54184 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56519 - Penicillin binding protein dimerisation domain
56601 - beta-lactamase/transpeptidase-like
54184 - Penicillin-binding protein 2x (pbp-2x), c-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Finegoldia_magna_ATCC_29328 1
Faecalibacterium_prausnitzii 1
Clostridium_sticklandii_DSM_519 1
Filifactor_alocis_ATCC_35896 0
Alkaliphilus_oremlandii_OhILAs 1
Alkaliphilus_metalliredigens_QYMF 1
Melioribacter_roseus_P3M 1
Chloroherpeton_thalassium_ATCC_35110 1
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 1
Chitinophaga_pinensis_DSM_2588 1
Rhodothermus_marinus_DSM_4252 1
Flexibacter_litoralis_DSM_6794 1
Candidatus_Amoebophilus_asiaticus_5a2 1
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 1
Fibrella_aestuarina 1
Dyadobacter_fermentans_DSM_18053 1
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 1
Parabacteroides_distasonis_ATCC_8503 1
Tannerella_forsythia_ATCC_43037 1
Paludibacter_propionicigenes_WB4 1
Odoribacter_splanchnicus_DSM_20712 1
Candidatus_Azobacteroides_pseudotrichonymphae_genomovar._CFP2 1
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_intermedia_17 1
Prevotella_denticola_F0289 1
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 1
Porphyromonas_gingivalis_ATCC_33277 1
Alistipes_finegoldii_DSM_17242 1
Bacteroides_salanitronis_DSM_18170 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_vulgatus_ATCC_8482 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 1
Solitalea_canadensis_DSM_3403 1
Pedobacter_heparinus_DSM_2366 1
Sphingobacterium_sp._21 1
Fluviicola_taffensis_DSM_16823 1
Candidatus_Chloracidobacterium_thermophilum_B 1
Granulicella_tundricola_MP5ACTX9 1
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_saanensis_SP1PR4 1
Acidobacterium_capsulatum_ATCC_51196 1
Desulfobacca_acetoxidans_DSM_11109 1
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Sorangium_cellulosum_'So_ce_56' 1
Corallococcus_coralloides_DSM_2259 1

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Strains
Genome     Number
Rhodothermus_marinus_SG0.5JP17-172 1
Echinicola_vietnamensis_DSM_17526 1
Prevotella_sp._oral_taxon_299_str._F0039 1
Prevotella_dentalis_DSM_3688 1
Porphyromonas_gingivalis_TDC60 1
Porphyromonas_gingivalis_W83 1
Alistipes_shahii_WAL_8301 1
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 1
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 1
STRING_v9.0.5_(STRING) 24
Uniprot_2018_03_genome 14980
NCBI_2017_08_genome 1080

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