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Domain combinations for _gap_,56712,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56712 - Prokaryotic type I DNA topoisomerase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ovis_aries_76_3.1   (Sheep)   2
Sorex_araneus_76_1   (European shrew)   1
Saccoglossus_kowalevskii_v3.0 1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Poecilia_formosa_76   (Amazon molly)   1
Danio_rerio_76_9   (Zebrafish)   2
Heliconius_melpomene_   (Postman butterfly)   1
Drosophila_suzukii 0
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Rhodnius_prolixus_22 1
Onchocerca_volvulus_22 1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 0
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Schistosoma_mansoni_ 1
Acropora_digitifera_v1.0 1
Hydra_vulgaris 2
Ustilago_maydis_ 0
Podospora_anserina_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Catenaria_anguillulae_PL171_v1.0 1
Dictyostelium_discoideum 1
Selaginella_moellendorffii_ 1
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 3
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   1
Cucumis_sativus_v122   (Cucumber)   2
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   0
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 3
Triticum_urartu_22 1
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   6
Oryza_meridionalis_22 7
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 7
Oryza_nivara_22 9
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Sorghum_bicolor_   (Sorghum)   1
Amborella_trichopoda_22 1
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 1
Bathycoccus_prasinos_ 2
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 1
Bigelowiella_natans_CCMP2755_22 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Albugo_laibachii_22 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 2
Tetrahymena_thermophila_SB210_1_ 3
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 1
Babesia_bovis_T2Bo_ 2
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 1
Emiliania_huxleyi_CCMP1516_ 1
Cryptobacterium_curtum_DSM_15641 1
Eggerthella_lenta_DSM_2243 1
Slackia_heliotrinireducens_DSM_20476 1
Olsenella_uli_DSM_7084 1
Atopobium_parvulum_DSM_20469 1
Coriobacterium_glomerans_PW2 1
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 1
Pseudonocardia_dioxanivorans_CB1190 1
Mycobacterium_sp._JLS 1
Deinococcus_radiodurans_R1 1
Desulfotomaculum_acetoxidans_DSM_771 1
Eubacterium_eligens_ATCC_27750 1
Clostridium_phytofermentans_ISDg 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Phycisphaera_mikurensis_NBRC_102666 0
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Sorangium_cellulosum_'So_ce_56' 0
Corallococcus_coralloides_DSM_2259 0
Burkholderia_pseudomallei_1106a 1
Burkholderia_glumae_BGR1 1
Thermogladius_cellulolyticus_1633 0
Aeropyrum_pernix_K1 0
Staphylothermus_hellenicus_DSM_12710 1
Staphylothermus_marinus_F1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Trypanosoma_brucei_Lister_427_v4.1 1
Adlercreutzia_equolifaciens_DSM_19450 1
Frankia_sp._EuI1c 1
Frankia_sp._CcI3 1
Streptomyces_venezuelae_ATCC_10712 1
Saccharothrix_espanaensis_DSM_44229 1
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Corynebacterium_pseudotuberculosis_3/99-5 1
Corynebacterium_pseudotuberculosis_I19 1
Corynebacterium_pseudotuberculosis_FRC41 1
Clavibacter_michiganensis_subsp._sepedonicus 1
Bifidobacterium_longum_NCC2705 1
Enterococcus_faecium_DO 1
Enterococcus_faecalis_OG1RF 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Myxococcus_stipitatus_DSM_14675 0
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Escherichia_coli_Xuzhou21 1
Aeropyrum_camini_SY1_=_JCM_12091 0

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Longest transcript per gene
Genome     Number
Sorex_araneus_69_1   (European shrew)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Danio_rerio_69_9   (Zebrafish)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   1
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_plasmid_sequences_(Plasmids) 2
Protozoadb_2010_08_(Protozoadb) 12
STRING_v9.0.5_(STRING) 42
NCBI_2017_08_genome 702
Uniprot_2018_03_genome 3635
TargetDB__(Targets) 1

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