SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,56837 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56837 - Colicin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pichia_membranifaciensv1.0 1
Naegleria_gruberi_ 0
Photorhabdus_asymbiotica 1
Proteus_mirabilis_HI4320 1
Erwinia_tasmaniensis_Et1/99 1
Erwinia_sp._Ejp617 1
Erwinia_pyrifoliae_Ep1/96 1
Shigella_sonnei_Ss046 1
Enterobacter_sp._638 2
Citrobacter_rodentium_ICC168 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_aeruginosa_UCBPP-PA14 1

Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Mannheimia_haemolytica_USMARC_2286 1
Mannheimia_haemolytica_M42548 1
Mannheimia_haemolytica_D174 1
Mannheimia_haemolytica_D171 1
Mannheimia_haemolytica_D153 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1
Rahnella_aquatilis_HX2 1
Serratia_plymuthica_S13 1
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_WW4 1
Erwinia_pyrifoliae_DSM_12163 1
Shigella_sonnei_53G 1
Escherichia_coli_SMS-3-5 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_aeruginosa_PAO1 1

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 18
Protein_Data_Bank_(all_PDB_sequenc) 1
PDB_chains_(SCOP_1.75)_(PDB) 1
STRING_v9.0.5_(STRING) 11
Uniprot_2018_03_genome 645
NCBI_2017_08_genome 2101

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