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Domain combinations for _gap_,57424,_gap_,47473,_gap_,50911 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57424 - LDL receptor-like module
47473 - EF-hand
50911 - Mannose 6-phosphate receptor domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   4
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Papio_anubis_76   (Olive baboon)   1
Equus_caballus_76_2   (Horse)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Nasonia_vitripennis_   (Jewel wasp)   1
Drosophila_willistoni_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Sarcoptes_scabiei 1
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   3
Trichinella_spiralis_22 1

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Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Equus_caballus_69_2   (Horse)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   6
Homo_sapiens__(NCBI_version)   (Human)   2
Loa_loa_v3.3_(Request)   (Eye worm)   1
STRING_v9.0.5_(STRING) 10
NCBI_2017_08_genome 87
Uniprot_2018_03_genome 1748
TargetDB__(Targets) 1

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