SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57424,_gap_,57424,57424,57424,48726,_gap_,57196,57196,_gap_,57196,57196,_gap_,57196,57196,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,48726,49899,57196,49899,57196,49899 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57424 - LDL receptor-like module
48726 - Immunoglobulin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin
49899 - Concanavalin A-like lectins/glucanases
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Papio_anubis_76   (Olive baboon)   2
Mus_musculus_76_38   (House mouse)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Bos_taurus_76_3.1   (Cattle)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   2
Pteropus_vampyrus_76_1   (Large flying fox)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Mus_musculus_69_38   (House mouse)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Bos_taurus_69_3.1   (Cattle)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 6
Uniprot_2018_03_genome 24928
NCBI_2017_08_genome 157

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