SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57603,57603,57603,57603,57603,57603,57440,57440,57603,57603,57603,49265,_gap_,49265,_gap_,49265,49265,49265,49265,49265,49265,_gap_,49265,_gap_,49265,_gap_,49265,57603,57603,57603,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57440 - Kringle-like
57440 - Kringle-like
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Takifugu_rubripes_76_4   (Torafugu)   4

Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Takifugu_rubripes_69_4   (Torafugu)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 14074
NCBI_2017_08_genome 90

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