SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57667,57667,57667,57667 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   29
Pan_troglodytes_76_2.1.4   (Chimpanzee)   10
Gorilla_gorilla_76_3.1   (Western gorilla)   17
Pongo_abelii_76_2   (Sumatran orangutan)   7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   10
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   13
Otolemur_garnettii_76_3   (Small-eared galago)   7
Microcebus_murinus_76_1   (Gray mouse lemur)   9
Rattus_norvegicus_76_5.0   (Norway rat)   8
Mus_musculus_76_38   (House mouse)   14
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13
Cavia_porcellus_76_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_76_2   (Rabbit)   7
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   6
Sus_scrofa_76_10.2   (Pig)   12
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   10
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   7
Felis_catus_76_6.2   (Domestic cat)   5
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   11
Sorex_araneus_76_1   (European shrew)   9
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   6
Loxodonta_africana_76_3   (African savanna elephant)   8
Echinops_telfairi_76   (Small Madagascar hedgehog)   9
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   14
Macropus_eugenii_76_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   2
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_76_2.0   (Green anole)   4
Xenopus_laevis_   (African clawed frog)   16
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_76_1   (Coelacanth)   2
Lepisosteus_oculatus_76   (Spotted gar)   9
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   4
Takifugu_rubripes_76_4   (Torafugu)   3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   4
Oryzias_latipes_76_1   (Japanese medaka)   6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   16
Poecilia_formosa_76   (Amazon molly)   15
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   137
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_76   (Vase tunicate)   6
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   6
Adineta_vaga 1
Octopus_bimaculoides_280 26
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   4
Helobdella_robusta_ 3
Capitella_sp._I_ 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   11
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 9
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 6
Drosophila_suzukii 1
Drosophila_yakuba_1.3 3
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   7
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 8
Drosophila_mojavensis_1.3 3
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   28
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   8
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   8
Tribolium_castaneum_3.0   (Red flour beetle)   9
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 4
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8
Pristionchus_pacificus_ 0
Meloidogyne_hapla_ 0
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   2
Acropora_digitifera_v1.0 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 1
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 0
Sphaeroforma_arctica_JP610_ 3
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 1
Rhizopus_oryzae_RA_99-880_ 0
Rhizomucor_miehei_CAU432_ 0
Rhodotorula_graminis_WP1_v1.0 1
Microbotryum_violaceum_22 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 1
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 0
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 0
Trametes_versicolor_v1.0 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Arthroderma_benhamiae_CBS_112371_ 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Candida_parapsilosis_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 0
Debaromyces_hansenii 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 0
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Kluyveromyces_lactis 0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 1
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Citrus_clementina_v165 0
Thellungiella_halophila_v173 0
Arabidopsis_thaliana_10   (Thale cress)   0
Cucumis_sativus_v122   (Cucumber)   0
Prunus_persica_v139   (Peach)   1
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Triticum_urartu_22 0
Aegilops_tauschii_22 0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Bathycoccus_prasinos_ 7
Bigelowiella_natans_CCMP2755_22 1
Pseudomonas_sp._UW4 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   21
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   7
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   10
Gorilla_gorilla_69_3.1   (Western gorilla)   11
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_69_3   (Small-eared galago)   7
Microcebus_murinus_69_1   (Gray mouse lemur)   9
Rattus_norvegicus_69_3.4   (Norway rat)   5
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   6
Sus_scrofa_69_10.2   (Pig)   10
Bos_taurus_69_3.1   (Cattle)   6
Vicugna_pacos_69_1   (Alpaca)   10
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   5
Canis_familiaris_69_3.1   (Dog)   7
Felis_catus_69   (Domestic cat)   6
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   11
Sorex_araneus_69_1   (European shrew)   9
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   6
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   9
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   12
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   14
Macropus_eugenii_69_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_69_5   (Platypus)   4
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   10
Latimeria_chalumnae_69_1   (Coelacanth)   2
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   16
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5
Danio_rerio_69_9   (Zebrafish)   91
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   5
Caenorhabditis_elegans_69_215   (Roundworm)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   31
Homo_sapiens__(NCBI_version)   (Human)   10
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   4
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9
NCBI_2017_08_genome 5454
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 299
Uniprot_2018_03_genome 27855

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