SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57667,57667,57667,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   51
Pan_troglodytes_76_2.1.4   (Chimpanzee)   18
Gorilla_gorilla_76_3.1   (Western gorilla)   18
Pongo_abelii_76_2   (Sumatran orangutan)   17
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15
Papio_anubis_76   (Olive baboon)   20
Macaca_mulatta_76_1   (Rhesus monkey)   25
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   40
Otolemur_garnettii_76_3   (Small-eared galago)   16
Microcebus_murinus_76_1   (Gray mouse lemur)   13
Rattus_norvegicus_76_5.0   (Norway rat)   18
Mus_musculus_76_38   (House mouse)   26
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   16
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   16
Cavia_porcellus_76_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_76_2   (Rabbit)   14
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   9
Sus_scrofa_76_10.2   (Pig)   15
Bos_taurus_76_3.1   (Cattle)   17
Ovis_aries_76_3.1   (Sheep)   25
Vicugna_pacos_76_1   (Alpaca)   8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   14
Ailuropoda_melanoleuca_76_1   (Giant panda)   14
Canis_familiaris_76_3.1   (Dog)   22
Felis_catus_76_6.2   (Domestic cat)   16
Equus_caballus_76_2   (Horse)   14
Myotis_lucifugus_76_2.0   (Little brown bat)   13
Pteropus_vampyrus_76_1   (Large flying fox)   14
Sorex_araneus_76_1   (European shrew)   8
Erinaceus_europaeus_76   (Western European hedgehog)   14
Procavia_capensis_76_1   (Cape rock hyrax)   20
Loxodonta_africana_76_3   (African savanna elephant)   20
Echinops_telfairi_76   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   21
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   13
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   14
Ornithorhynchus_anatinus_76_5   (Platypus)   6
Saccoglossus_kowalevskii_v3.0 28
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   11
Gallus_gallus_76_4   (Chicken)   13
Anas_platyrhynchos_76_1.0   (Mallard)   10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   12
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_76_2.0   (Green anole)   11
Xenopus_laevis_   (African clawed frog)   34
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   12
Latimeria_chalumnae_76_1   (Coelacanth)   13
Lepisosteus_oculatus_76   (Spotted gar)   21
Gadus_morhua_76_1   (Atlantic cod)   10
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   20
Takifugu_rubripes_76_4   (Torafugu)   41
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   18
Oryzias_latipes_76_1   (Japanese medaka)   13
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   16
Poecilia_formosa_76   (Amazon molly)   17
Oreochromis_niloticus_76_1.0   (Nile tilapia)   23
Astyanax_mexicanus_76   (Mexican tetra)   20
Danio_rerio_76_9   (Zebrafish)   44
Oikopleura_dioica 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   15
Adineta_vaga 9
Octopus_bimaculoides_280 24
Crassostrea_gigas_22   (Pacific oyster)   18
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 8
Capitella_sp._I_ 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   20
Heliconius_melpomene_   (Postman butterfly)   20
Bombyx_mori_   (Domestic silkworm)   10
Nasonia_vitripennis_   (Jewel wasp)   9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   19
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   14
Solenopsis_invicta_v.2.2.3   (Red fire ant)   11
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   11
Atta_cephalotes_v1.1 17
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   22
Drosophila_grimshawi_1.3 20
Drosophila_willistoni_1.3 25
Drosophila_pseudoobscura_2.13 20
Drosophila_persimilis_1.3 17
Drosophila_suzukii 18
Drosophila_yakuba_1.3 26
Drosophila_simulans_1.3 24
Drosophila_sechellia_1.3 23
Drosophila_melanogaster_76_5   (Fruit fly)   55
Drosophila_erecta_1.3 25
Drosophila_ananassae_1.3 25
Drosophila_virilis_1.2 24
Drosophila_mojavensis_1.3 22
Megaselia_scalaris_22 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   32
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   33
Anopheles_darlingi_22   (American malaria mosquito)   20
Anopheles_gambiae_49_3j   (African malaria mosquito)   12
Tribolium_castaneum_3.0   (Red flour beetle)   12
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   19
Acyrthosiphon_pisum_   (Pea aphid)   10
Rhodnius_prolixus_22 11
Daphnia_pulex_   (Common water flea)   5
Strigamia_maritima_22 12
Sarcoptes_scabiei 12
Tetranychus_urticae_   (Two-spotted spider mite)   13
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   9
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   5
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 8
Caenorhabditis_remanei_ 10
Caenorhabditis_elegans_76_235   (Roundworm)   11
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 13
Echinococcus_multilocularis_ 14
Echinococcus_granulosus_ 13
Taenia_solium_   (Pork tapeworm)   11
Schistosoma_mansoni_ 14
Mnemiopsis_leidyi   (Sea walnut)   18
Acropora_digitifera_v1.0 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 2
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 1
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 1
Mortierella_verticillata_NRRL_6337_ 2
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 3
Rhizomucor_miehei_CAU432_ 1
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Rhodotorula_graminis_WP1_v1.0 1
Microbotryum_violaceum_22 2
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Hydnomerulius_pinastri_v2.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Agaricus_bisporus_var._bisporus_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Dichomitus_squalens 0
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   0
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 0
Thielavia_terrestris_NRRL_8126_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Septoria_musiva_v1.0 1
Coccidioides_posadasii_RMSCC_3488_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 1
Candida_albicans_SC5314 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Pichia_pastoris_GS115_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Kluyveromyces_thermotolerans_CBS_6340 0
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 2
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Schizosaccharomyces_pombe   (Fission yeast)   0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 1
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 0
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   1
Malus_domestica_v196   (Apple)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   0
Aquilegia_coerulea_v195 1
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 1
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 0
Bathycoccus_prasinos_ 0
Bigelowiella_natans_CCMP2755_22 3
Cyanophora_paradoxa_ 1
Ectocarpus_siliculosus 0
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   25
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   37
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   18
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   11
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_JEC21_ 0
Coccidioides_immitis_RMSCC_3703_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   20
Pan_troglodytes_69_2.1.4   (Chimpanzee)   17
Gorilla_gorilla_69_3.1   (Western gorilla)   12
Pongo_abelii_69_2   (Sumatran orangutan)   17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   17
Macaca_mulatta_69_1   (Rhesus monkey)   15
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   18
Otolemur_garnettii_69_3   (Small-eared galago)   16
Microcebus_murinus_69_1   (Gray mouse lemur)   13
Rattus_norvegicus_69_3.4   (Norway rat)   18
Mus_musculus_69_38   (House mouse)   16
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14
Cavia_porcellus_69_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_69_2   (Rabbit)   14
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   9
Sus_scrofa_69_10.2   (Pig)   12
Bos_taurus_69_3.1   (Cattle)   16
Vicugna_pacos_69_1   (Alpaca)   8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   14
Ailuropoda_melanoleuca_69_1   (Giant panda)   14
Canis_familiaris_69_3.1   (Dog)   17
Felis_catus_69   (Domestic cat)   10
Equus_caballus_69_2   (Horse)   14
Myotis_lucifugus_69_2.0   (Little brown bat)   13
Pteropus_vampyrus_69_1   (Large flying fox)   14
Sorex_araneus_69_1   (European shrew)   8
Erinaceus_europaeus_69   (Western European hedgehog)   14
Procavia_capensis_69_1   (Cape rock hyrax)   20
Loxodonta_africana_69_3   (African savanna elephant)   14
Echinops_telfairi_69   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   8
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   13
Ornithorhynchus_anatinus_69_5   (Platypus)   6
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   9
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   10
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   10
Latimeria_chalumnae_69_1   (Coelacanth)   12
Gadus_morhua_69_1   (Atlantic cod)   10
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   17
Takifugu_rubripes_69_4   (Torafugu)   15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   13
Oryzias_latipes_69_1   (Japanese medaka)   13
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   16
Oreochromis_niloticus_69_1.0   (Nile tilapia)   16
Danio_rerio_69_9   (Zebrafish)   27
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   27
Caenorhabditis_elegans_69_215   (Roundworm)   7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   51
Homo_sapiens__(NCBI_version)   (Human)   29
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   16
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
STRING_v9.0.5_(STRING) 722
Uniprot_2018_03_genome 73150
Protozoadb_2010_08_(Protozoadb) 2
NCBI_2017_08_genome 11615
TargetDB__(Targets) 8

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