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Domain combinations for _gap_,57667,_gap_,57667,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   26
Pan_troglodytes_76_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_76_3.1   (Western gorilla)   11
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7
Papio_anubis_76   (Olive baboon)   7
Macaca_mulatta_76_1   (Rhesus monkey)   18
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   21
Otolemur_garnettii_76_3   (Small-eared galago)   7
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   8
Mus_musculus_76_38   (House mouse)   11
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   8
Ochotona_princeps_76   (American pika)   9
Tupaia_belangeri_76   (Northern tree shrew)   7
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   8
Ovis_aries_76_3.1   (Sheep)   8
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   8
Mustela_putorius_furo_76_1.0   (Domestic ferret)   9
Ailuropoda_melanoleuca_76_1   (Giant panda)   7
Canis_familiaris_76_3.1   (Dog)   10
Felis_catus_76_6.2   (Domestic cat)   8
Equus_caballus_76_2   (Horse)   8
Myotis_lucifugus_76_2.0   (Little brown bat)   12
Pteropus_vampyrus_76_1   (Large flying fox)   6
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   9
Procavia_capensis_76_1   (Cape rock hyrax)   13
Loxodonta_africana_76_3   (African savanna elephant)   16
Echinops_telfairi_76   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_76_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_76_5   (Platypus)   9
Saccoglossus_kowalevskii_v3.0 10
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   11
Gallus_gallus_76_4   (Chicken)   7
Anas_platyrhynchos_76_1.0   (Mallard)   6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_76_2.0   (Green anole)   7
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_76_1   (Coelacanth)   7
Lepisosteus_oculatus_76   (Spotted gar)   7
Gadus_morhua_76_1   (Atlantic cod)   12
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9
Takifugu_rubripes_76_4   (Torafugu)   15
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   9
Oryzias_latipes_76_1   (Japanese medaka)   5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10
Poecilia_formosa_76   (Amazon molly)   11
Oreochromis_niloticus_76_1.0   (Nile tilapia)   11
Astyanax_mexicanus_76   (Mexican tetra)   12
Danio_rerio_76_9   (Zebrafish)   20
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5
Adineta_vaga 8
Octopus_bimaculoides_280 9
Crassostrea_gigas_22   (Pacific oyster)   6
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 5
Capitella_sp._I_ 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8
Heliconius_melpomene_   (Postman butterfly)   9
Bombyx_mori_   (Domestic silkworm)   5
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   8
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6
Solenopsis_invicta_v.2.2.3   (Red fire ant)   5
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5
Atta_cephalotes_v1.1 9
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8
Lucilia_cuprina   (Australian sheep blowfly)   8
Drosophila_grimshawi_1.3 14
Drosophila_willistoni_1.3 10
Drosophila_pseudoobscura_2.13 12
Drosophila_persimilis_1.3 10
Drosophila_suzukii 10
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 7
Drosophila_sechellia_1.3 10
Drosophila_melanogaster_76_5   (Fruit fly)   17
Drosophila_erecta_1.3 7
Drosophila_ananassae_1.3 8
Drosophila_virilis_1.2 11
Drosophila_mojavensis_1.3 12
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   13
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   17
Anopheles_darlingi_22   (American malaria mosquito)   10
Anopheles_gambiae_49_3j   (African malaria mosquito)   7
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 5
Daphnia_pulex_   (Common water flea)   4
Strigamia_maritima_22 6
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 9
Meloidogyne_incognita_   (Southern root-knot nematode)   7
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   8
Caenorhabditis_japonica_ 6
Caenorhabditis_brenneri_ 13
Caenorhabditis_remanei_ 11
Caenorhabditis_elegans_76_235   (Roundworm)   11
Caenorhabditis_briggsae_2 10
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 8
Echinococcus_multilocularis_ 8
Echinococcus_granulosus_ 6
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 5
Mnemiopsis_leidyi   (Sea walnut)   6
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 1
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 1
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 4
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 4
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 1
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 2
Microbotryum_violaceum_22 1
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 1
Punctularia_strigosozonata_v1.0 2
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 2
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Neurospora_tetrasperma_ 1
Verticillium_dahliae_VdLs.17_ 1
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 1
Fusarium_verticillioides_7600_ 0
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Didymella_exigua_CBS_183.55_v1.0 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 0
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 2
Allomyces_macrogynus_ATCC_38327_ 5
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 1
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 1
Pinus_taeda   (Loblolly pine)   6
Picea_abies   (Norway spruce)   5
Eucalyptus_grandis_v201   (Rose gum)   7
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6
Gossypium_raimondii_v221 9
Citrus_clementina_v165 13
Citrus_sinensis_v154   (Sweet orange)   10
Thellungiella_halophila_v173 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   9
Capsella_rubella_v183 6
Arabidopsis_lyrata_   (Lyrate rockcress)   7
Arabidopsis_thaliana_10   (Thale cress)   6
Carica_papaya_   (Papaya)   3
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   6
Glycine_max_v109   (Soybean)   5
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   12
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   8
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   3
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   8
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   13
Actinidia_chinensis_Hongyang_ 7
Aquilegia_coerulea_v195 6
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 9
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 4
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4
Oryza_sativa_v193   (Rice)   4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   6
Zea_mays_v181   (Maize)   6
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   5
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 3
Physcomitrella_patens 2
Chlamydomonas_reinhardtii_4.0 0
Bathycoccus_prasinos_ 1
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 3
Trypanosoma_vivax_ 3
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 1
Ectocarpus_siliculosus 1
Albugo_laibachii_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 2
Perkinsus_marinus_ATCC_50983_ 4
Neospora_caninum 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   10
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Aspergillus_fumigatus_A1163_ 1
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_69_3.1   (Western gorilla)   8
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6
Macaca_mulatta_69_1   (Rhesus monkey)   8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_69_3   (Small-eared galago)   7
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   7
Mus_musculus_69_38   (House mouse)   7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   9
Tupaia_belangeri_69   (Northern tree shrew)   7
Sus_scrofa_69_10.2   (Pig)   3
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   8
Mustela_putorius_furo_69_1.0   (Domestic ferret)   9
Ailuropoda_melanoleuca_69_1   (Giant panda)   7
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   12
Pteropus_vampyrus_69_1   (Large flying fox)   6
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   9
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   9
Echinops_telfairi_69   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   8
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_69_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   9
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   9
Gallus_gallus_69_2   (Chicken)   5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_69_2.0   (Green anole)   7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   8
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9
Oryzias_latipes_69_1   (Japanese medaka)   4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   15
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   2
Drosophila_melanogaster_69_5   (Fruit fly)   6
Caenorhabditis_elegans_69_215   (Roundworm)   9
Arabidopsis_thaliana_10   (Thale cress)   5

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   26
Homo_sapiens__(NCBI_version)   (Human)   13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   12
Ricinus_communis__(Early_assembly)   (Castor bean)   5
Nicotiana_benthamiana_0.4.4_(Early_draft) 13
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   8
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Protozoadb_2010_08_(Protozoadb) 11
Core_Eukaryotic_Genes_458_(CEGMA) 5
TargetDB__(Targets) 10
STRING_v9.0.5_(STRING) 418
Uniprot_2018_03_genome 42003
NCBI_2017_08_genome 7343

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