SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,57756,50630,56672,53098,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
50630 - Acid proteases
56672 - DNA/RNA polymerases
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10
Bombyx_mori_   (Domestic silkworm)   3
Tribolium_castaneum_3.0   (Red flour beetle)   11
Acyrthosiphon_pisum_   (Pea aphid)   6
Pristionchus_pacificus_ 1
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 15
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 2
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 27
Hydra_vulgaris 1
Amphimedon_queenslandica 2
Rhizopus_oryzae_RA_99-880_ 3
Yarrowia_lipolytica_CLIB122 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10
Glycine_max_v109   (Soybean)   3
Prunus_persica_v139   (Peach)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   64
Oryza_sativa_v193   (Rice)   63
Sorghum_bicolor_   (Sorghum)   1
Phytophthora_sojae_1.1 2
Perkinsus_marinus_ATCC_50983_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2

Others
Genome     Number
STRING_v9.0.5_(STRING) 111
NCBI_2017_08_genome 178
Uniprot_2018_03_genome 9500
UniProt__viral_sequences_(Viral) 0
NCBI_viral_sequences_(Viral) 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]