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Domain combinations for _gap_,57756,50630,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
50630 - Acid proteases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mus_musculus_76_38   (House mouse)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Oryzias_latipes_76_1   (Japanese medaka)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 3
Capitella_sp._I_ 1
Tribolium_castaneum_3.0   (Red flour beetle)   2
Daphnia_pulex_   (Common water flea)   3
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 2
Caenorhabditis_japonica_ 8
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 12
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 3
Sphaerobolus_stellatus_v1.0 4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5
Oryza_sativa_v193   (Rice)   5
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_sojae_1.1 0
Perkinsus_marinus_ATCC_50983_ 3
Symbiodinium_minutum_clade_B1_v1.2 1

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Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3

Longest transcript per gene
Genome     Number
Mus_musculus_69_38   (House mouse)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Oryzias_latipes_69_1   (Japanese medaka)   0
Caenorhabditis_elegans_69_215   (Roundworm)   2

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
STRING_v9.0.5_(STRING) 34
NCBI_2017_08_genome 42
Uniprot_2018_03_genome 2223
TargetDB__(Targets) 2

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