SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57756,56672 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
56672 - DNA/RNA polymerases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Saccoglossus_kowalevskii_v3.0 2
Anolis_carolinensis_76_2.0   (Green anole)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   1
Oryzias_latipes_76_1   (Japanese medaka)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   1
Tribolium_castaneum_3.0   (Red flour beetle)   2
Acyrthosiphon_pisum_   (Pea aphid)   0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 1
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 9
Hydra_vulgaris 2
Amphimedon_queenslandica 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Sclerotinia_sclerotiorum_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Schizosaccharomyces_japonicus_yFS275_ 1
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   33
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   2
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   4
Populus_trichocarpa_v156   (Black cottonwood)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_tuberosum_   (Potato)   1
Triticum_urartu_22 0
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   24
Oryza_sativa_v193   (Rice)   25
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   25
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 1
Perkinsus_marinus_ATCC_50983_ 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Cryptococcus_neoformans_B-3501A_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   54
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Latimeria_chalumnae_69_1   (Coelacanth)   0
Oryzias_latipes_69_1   (Japanese medaka)   0

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
STRING_v9.0.5_(STRING) 41
NCBI_2017_08_genome 325
Uniprot_2018_03_genome 2112

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