SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57756,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   3
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2
Papio_anubis_76   (Olive baboon)   3
Macaca_mulatta_76_1   (Rhesus monkey)   5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   4
Ovis_aries_76_3.1   (Sheep)   2
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 25
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_76_2.0   (Green anole)   4
Xenopus_laevis_   (African clawed frog)   12
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   44
Latimeria_chalumnae_76_1   (Coelacanth)   13
Lepisosteus_oculatus_76   (Spotted gar)   5
Gadus_morhua_76_1   (Atlantic cod)   5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7
Takifugu_rubripes_76_4   (Torafugu)   7
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   14
Oryzias_latipes_76_1   (Japanese medaka)   3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4
Poecilia_formosa_76   (Amazon molly)   3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   3
Danio_rerio_76_9   (Zebrafish)   14
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 9
Octopus_bimaculoides_280 23
Crassostrea_gigas_22   (Pacific oyster)   17
Lottia_gigantea_   (Owl limpet)   29
Helobdella_robusta_ 18
Capitella_sp._I_ 17
Danaus_plexippus_OGS1.0   (Monarch butterfly)   16
Heliconius_melpomene_   (Postman butterfly)   6
Bombyx_mori_   (Domestic silkworm)   31
Nasonia_vitripennis_   (Jewel wasp)   4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   8
Linepithema_humile_v1.1   (Argentine ant)   14
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   10
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   22
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 5
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   9
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   16
Anopheles_darlingi_22   (American malaria mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   44
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 21
Daphnia_pulex_   (Common water flea)   59
Strigamia_maritima_22 66
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10
Pristionchus_pacificus_ 5
Meloidogyne_incognita_   (Southern root-knot nematode)   27
Meloidogyne_hapla_ 21
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 48
Caenorhabditis_brenneri_ 6
Caenorhabditis_remanei_ 33
Caenorhabditis_elegans_76_235   (Roundworm)   3
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 21
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   16
Thelohanellus_kitauei 18
Acropora_digitifera_v1.0 41
Nematostella_vectensis_1.0   (Starlet sea anemone)   4
Hydra_vulgaris 13
Amphimedon_queenslandica 22
Trichoplax_adhaerens_ 3
Proterospongia_sp._ATCC_50818_ 5
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 3
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 6
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 29
Rhizopus_oryzae_RA_99-880_ 55
Mucor_circinelloides_ 13
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 3
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 27
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 91
Melampsora_laricis-populina_ 23
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 122
Piloderma_croceum_F_1598_v1.0 24
Serpula_lacrymans_var._lacrymans_S7.9_ 86
Coniophora_puteana 6
Hydnomerulius_pinastri_v2.0 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 6
Pisolithus_microcarpus_441_v1.0 30
Pisolithus_tinctorius_Marx_270_v1.0 43
Scleroderma_citrinum_Foug_A_v1.0 49
Coprinopsis_cinerea_okayama7_130_v3 4
Pleurotus_ostreatus_   (Oyster mushroom)   15
Amanita_thiersii_Skay4041_v1.0 63
Amanita_muscaria_Koide_v1.0   (Fly agaric)   24
Galerina_marginata_v1.0 17
Hebeloma_cylindrosporum_h7_v2.0 7
Laccaria_bicolor_S238N-H82_ 21
Agaricus_bisporus_var._bisporus_ 27
Schizophyllum_commune_ 22
Stereum_hirsutum_FP-91666_SS1__v1.0 8
Heterobasidion_annosum_ 55
Gloeophyllum_trabeumv1.0 11
Punctularia_strigosozonata_v1.0 13
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 93
Wolfiporia_cocos_MD-104_SS10__v1.0 33
Fomitopsis_pinicolav1.0 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 26
Dichomitus_squalens 13
Trametes_versicolor_v1.0 13
Tremella_mesenterica_   (Witches' butter)   132
Daldinia_eschscholzii_EC12_v1.0 5
Apiospora_montagnei_NRRL_25634_v1.0 4
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 1
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 5
Sclerotinia_sclerotiorum_ 10
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 4
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Dothistroma_septosporum 1
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2
Paracoccidioides_brasiliensis_Pb18_ 6
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 5
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Dekkera_bruxellensis_CBS_2499_v2.0 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 7
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 2
Candida_albicans_SC5314 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   0
Catenaria_anguillulae_PL171_v1.0 16
Allomyces_macrogynus_ATCC_38327_ 11
Spizellomyces_punctatus_DAOM_BR117_ 6
Dictyostelium_discoideum 5
Dictyostelium_purpureum_ 13
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 3
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 15
Pinus_taeda   (Loblolly pine)   26
Picea_abies   (Norway spruce)   7
Eucalyptus_grandis_v201   (Rose gum)   31
Theobroma_cacao_B97-61/B2_v1   (Cacao)   200
Gossypium_raimondii_v221 36
Citrus_clementina_v165 9
Citrus_sinensis_v154   (Sweet orange)   38
Thellungiella_halophila_v173 34
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   20
Capsella_rubella_v183 11
Arabidopsis_lyrata_   (Lyrate rockcress)   9
Arabidopsis_thaliana_10   (Thale cress)   8
Carica_papaya_   (Papaya)   7
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   15
Glycine_max_v109   (Soybean)   33
Cucumis_sativus_v122   (Cucumber)   21
Fragaria_vesca_   (Wild strawberry)   50
Malus_domestica_v196   (Apple)   38
Prunus_persica_v139   (Peach)   40
Linum_usitatissimum_v200   (Flax)   14
Manihot_esculenta_v147   (Cassava)   34
Populus_trichocarpa_v156   (Black cottonwood)   34
Vitis_vinifera_   (Wine grape)   6
Mimulus_guttatus_v140   (Spotted monkey flower)   8
Solanum_lycopersicum_v.2.3   (Tomato)   19
Solanum_tuberosum_   (Potato)   53
Actinidia_chinensis_Hongyang_ 34
Aquilegia_coerulea_v195 37
Triticum_urartu_22 16
Triticum_aestivum_22   (Bread wheat)   34
Aegilops_tauschii_22 9
Brachypodium_distachyon_   (Stiff brome)   20
Oryza_barthii_22   (African wild rice)   11
Oryza_meridionalis_22 18
Oryza_glumaepatula_22 15
Oryza_glaberrima   (African rice)   14
Oryza_punctata_22 24
Oryza_nivara_22 23
Oryza_brachyantha_22   (Malo sina)   12
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   235
Oryza_sativa_v193   (Rice)   232
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10
Panicum_virgatum_v202   (Switchgrass)   57
Setaria_italica_v164   (Foxtail millet)   35
Zea_mays_subsp._mays_   (Maize)   65
Zea_mays_v181   (Maize)   56
Sorghum_bicolor_   (Sorghum)   128
Musa_balbisiana   (Balbis banana)   453
Musa_acuminata_22   (Wild Malaysian banana)   10
Amborella_trichopoda_22 18
Physcomitrella_patens 99
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 6
Volvox_carteri_v199 4
Chlamydomonas_reinhardtii_4.0 4
Ostreococcus_sp._RCC809_ 2
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 5
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 3
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 12
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 2
Trypanosoma_cruzi_strain_CL_Brener 3
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 4
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 20
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   49
Phytophthora_sojae_1.1 44
Phytophthora_infestans_T30-4_ 27
Phytophthora_capsici_ 10
Hyaloperonospora_arabidopsidis_22 3
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 15
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 36
Paramecium_tetraurelia_ 4
Tetrahymena_thermophila_SB210_1_ 1
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 1
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Theileria_parva__ 0
Plasmodium_knowlesi_strain_H_ 0
Symbiodinium_minutum_clade_B1_v1.2 177
Naegleria_gruberi_ 2
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 7
Emiliania_huxleyi_CCMP1516_ 9

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   69
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 3
Cryptococcus_neoformans_B-3501A_ 2
Cryptococcus_neoformans_JEC21_ 2
Paracoccidioides_brasiliensis_Pb01_ 8
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 6
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   295
Hordeum_vulgare_22   (Domesticated barley)   31
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   107
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   35
Latimeria_chalumnae_69_1   (Coelacanth)   13
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   13
Oryzias_latipes_69_1   (Japanese medaka)   3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   7

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Moniliophthora_perniciosa_FA553__(Genome_survey) 19
Encephalitozoon_intestinalis__(endoparasite) 1
Lotus_japonicus__(Early_assembly) 39
Malus_x_domestica_(Duplicate)   (Apple)   38
Ricinus_communis__(Early_assembly)   (Castor bean)   6
Nicotiana_benthamiana_0.4.4_(Early_draft) 30
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   19
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   19
Phoenix_dactylifera__(Early_draft)   (Date palm)   16
Protein_Data_Bank_(all_PDB_sequenc) 5
STRING_v9.0.5_(STRING) 1297
NCBI_2017_08_genome 9923
Uniprot_2018_03_genome 72260
TargetDB__(Targets) 8
Protozoadb_2010_08_(Protozoadb) 33
UniProt__viral_sequences_(Viral) 249
Core_Eukaryotic_Genes_458_(CEGMA) 1
NCBI_viral_sequences_(Viral) 22

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