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Domain combinations for _gap_,57756,_gap_,53098 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Bombyx_mori_   (Domestic silkworm)   0
Nasonia_vitripennis_   (Jewel wasp)   1
Drosophila_willistoni_1.3 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Strigamia_maritima_22 2
Sarcoptes_scabiei 0
Trichinella_spiralis_22 0
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 0
Amphimedon_queenslandica 0
Microbotryum_violaceum_22 1
Sphaerobolus_stellatus_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 0
Agaricus_bisporus_var._bisporus_ 0
Phanerochaete_chrysosporium_RP-78_2.1 1
Sclerotinia_sclerotiorum_ 0
Blumeria_graminis_22 1
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Kluyveromyces_waltii 1
Spizellomyces_punctatus_DAOM_BR117_ 4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   77
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Glycine_max_v109   (Soybean)   0
Fragaria_vesca_   (Wild strawberry)   0
Vitis_vinifera_   (Wine grape)   0
Solanum_lycopersicum_v.2.3   (Tomato)   5
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 1
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   17
Oryza_sativa_v193   (Rice)   17
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   7
Porphyridium_purpureum_02_2012 1
Albugo_laibachii_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   12
Phytophthora_sojae_1.1 12
Phytophthora_infestans_T30-4_ 2
Phaeodactylum_tricornutumCCAP_1055/1 0
Perkinsus_marinus_ATCC_50983_ 0
Symbiodinium_minutum_clade_B1_v1.2 5

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Histoplasma_capsulatum_H88 0
Batrachochytrium_dendrobatidis_JEL423_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   14
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4

Longest transcript per gene
Genome     Number
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0

Others
Genome     Number
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   5
NCBI_2017_08_genome 122
STRING_v9.0.5_(STRING) 47
Uniprot_2018_03_genome 2772

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