SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,57756,_gap_,53098,56672 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
53098 - Ribonuclease H-like
56672 - DNA/RNA polymerases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Astyanax_mexicanus_76   (Mexican tetra)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Nasonia_vitripennis_   (Jewel wasp)   19
Drosophila_willistoni_1.3 1
Tribolium_castaneum_3.0   (Red flour beetle)   2
Trichinella_spiralis_22 3
Acropora_digitifera_v1.0 1
Amphimedon_queenslandica 2
Galerina_marginata_v1.0 1
Penicillium_marneffei_ATCC_18224_ 1
Spizellomyces_punctatus_DAOM_BR117_ 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   205
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Glycine_max_v109   (Soybean)   1
Fragaria_vesca_   (Wild strawberry)   2
Brachypodium_distachyon_   (Stiff brome)   15
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   304
Oryza_sativa_v193   (Rice)   299
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5
Phytophthora_sojae_1.1 24
Symbiodinium_minutum_clade_B1_v1.2 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Batrachochytrium_dendrobatidis_JEL423_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   17
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   33

Others
Genome     Number
STRING_v9.0.5_(STRING) 403
Uniprot_2018_03_genome 11676
NCBI_2017_08_genome 53

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]