SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57850,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   99
Pan_troglodytes_76_2.1.4   (Chimpanzee)   30
Gorilla_gorilla_76_3.1   (Western gorilla)   42
Pongo_abelii_76_2   (Sumatran orangutan)   31
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   30
Papio_anubis_76   (Olive baboon)   34
Macaca_mulatta_76_1   (Rhesus monkey)   50
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   53
Otolemur_garnettii_76_3   (Small-eared galago)   28
Microcebus_murinus_76_1   (Gray mouse lemur)   22
Rattus_norvegicus_76_5.0   (Norway rat)   36
Mus_musculus_76_38   (House mouse)   90
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   28
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   26
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   31
Cavia_porcellus_76_3   (Domestic guinea pig)   30
Oryctolagus_cuniculus_76_2   (Rabbit)   39
Ochotona_princeps_76   (American pika)   28
Tupaia_belangeri_76   (Northern tree shrew)   25
Sus_scrofa_76_10.2   (Pig)   36
Bos_taurus_76_3.1   (Cattle)   33
Ovis_aries_76_3.1   (Sheep)   38
Vicugna_pacos_76_1   (Alpaca)   22
Tursiops_truncatus_76_1   (Bottlenose dolphin)   29
Mustela_putorius_furo_76_1.0   (Domestic ferret)   28
Ailuropoda_melanoleuca_76_1   (Giant panda)   29
Canis_familiaris_76_3.1   (Dog)   42
Felis_catus_76_6.2   (Domestic cat)   32
Equus_caballus_76_2   (Horse)   28
Myotis_lucifugus_76_2.0   (Little brown bat)   30
Pteropus_vampyrus_76_1   (Large flying fox)   31
Sorex_araneus_76_1   (European shrew)   21
Erinaceus_europaeus_76   (Western European hedgehog)   22
Procavia_capensis_76_1   (Cape rock hyrax)   27
Loxodonta_africana_76_3   (African savanna elephant)   47
Echinops_telfairi_76   (Small Madagascar hedgehog)   27
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   48
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   21
Macropus_eugenii_76_1.0   (Tammar wallaby)   18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   47
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   31
Ornithorhynchus_anatinus_76_5   (Platypus)   23
Saccoglossus_kowalevskii_v3.0 26
Petromyzon_marinus_76_7.0   (Sea lamprey)   5
Meleagris_gallopavo_76_2   (Turkey)   22
Gallus_gallus_76_4   (Chicken)   26
Anas_platyrhynchos_76_1.0   (Mallard)   20
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   22
Ficedula_albicollis_76_1.0   (Collared flycatcher)   21
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   36
Anolis_carolinensis_76_2.0   (Green anole)   24
Xenopus_laevis_   (African clawed frog)   56
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   34
Latimeria_chalumnae_76_1   (Coelacanth)   43
Lepisosteus_oculatus_76   (Spotted gar)   37
Gadus_morhua_76_1   (Atlantic cod)   19
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   31
Takifugu_rubripes_76_4   (Torafugu)   57
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   33
Oryzias_latipes_76_1   (Japanese medaka)   29
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   28
Poecilia_formosa_76   (Amazon molly)   32
Oreochromis_niloticus_76_1.0   (Nile tilapia)   37
Astyanax_mexicanus_76   (Mexican tetra)   32
Danio_rerio_76_9   (Zebrafish)   58
Oikopleura_dioica 18
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   19
Ciona_intestinalis_76   (Vase tunicate)   13
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   27
Adineta_vaga 62
Octopus_bimaculoides_280 34
Crassostrea_gigas_22   (Pacific oyster)   26
Lottia_gigantea_   (Owl limpet)   16
Helobdella_robusta_ 24
Capitella_sp._I_ 29
Danaus_plexippus_OGS1.0   (Monarch butterfly)   14
Heliconius_melpomene_   (Postman butterfly)   19
Bombyx_mori_   (Domestic silkworm)   8
Nasonia_vitripennis_   (Jewel wasp)   16
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   18
Linepithema_humile_v1.1   (Argentine ant)   17
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   17
Solenopsis_invicta_v.2.2.3   (Red fire ant)   14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   19
Atta_cephalotes_v1.1 15
Camponotus_floridanus_v3.3   (Florida carpenter ant)   20
Lucilia_cuprina   (Australian sheep blowfly)   17
Drosophila_grimshawi_1.3 18
Drosophila_willistoni_1.3 20
Drosophila_pseudoobscura_2.13 21
Drosophila_persimilis_1.3 24
Drosophila_suzukii 22
Drosophila_yakuba_1.3 24
Drosophila_simulans_1.3 19
Drosophila_sechellia_1.3 23
Drosophila_melanogaster_76_5   (Fruit fly)   46
Drosophila_erecta_1.3 23
Drosophila_ananassae_1.3 22
Drosophila_virilis_1.2 22
Drosophila_mojavensis_1.3 21
Megaselia_scalaris_22 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   15
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   24
Anopheles_darlingi_22   (American malaria mosquito)   19
Anopheles_gambiae_49_3j   (African malaria mosquito)   16
Tribolium_castaneum_3.0   (Red flour beetle)   15
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   13
Acyrthosiphon_pisum_   (Pea aphid)   13
Rhodnius_prolixus_22 11
Daphnia_pulex_   (Common water flea)   23
Strigamia_maritima_22 15
Sarcoptes_scabiei 16
Tetranychus_urticae_   (Two-spotted spider mite)   18
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   12
Pristionchus_pacificus_ 60
Meloidogyne_incognita_   (Southern root-knot nematode)   32
Meloidogyne_hapla_ 14
Onchocerca_volvulus_22 18
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   20
Caenorhabditis_japonica_ 23
Caenorhabditis_brenneri_ 73
Caenorhabditis_remanei_ 43
Caenorhabditis_elegans_76_235   (Roundworm)   39
Caenorhabditis_briggsae_2 27
Trichinella_spiralis_22 7
Hymenolepis_microstoma_ 16
Echinococcus_multilocularis_ 24
Echinococcus_granulosus_ 24
Taenia_solium_   (Pork tapeworm)   20
Schistosoma_mansoni_ 28
Mnemiopsis_leidyi   (Sea walnut)   22
Thelohanellus_kitauei 5
Acropora_digitifera_v1.0 23
Nematostella_vectensis_1.0   (Starlet sea anemone)   21
Hydra_vulgaris 12
Amphimedon_queenslandica 22
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 25
Monosiga_brevicollis_ 13
Sphaeroforma_arctica_JP610_ 19
Capsaspora_owczarzaki_ATCC_30864_ 25
Conidiobolus_coronatus_NRRL28638_v1.0 9
Mortierella_verticillata_NRRL_6337_ 25
Phycomyces_blakesleeanus_ 15
Rhizopus_oryzae_RA_99-880_ 7
Mucor_circinelloides_ 12
Rhizomucor_miehei_CAU432_ 15
Malassezia_globosa_CBS_7966_ 12
Sporisorium_reilianum_22 14
Ustilago_maydis_ 16
Mixia_osmundae_IAM_14324_v1.0 16
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 13
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 43
Melampsora_laricis-populina_ 15
Rhodotorula_graminis_WP1_v1.0 20
Sporobolomyces_roseus_IAM_13481_ 9
Microbotryum_violaceum_22 19
Wallemia_sebi_v1.0 9
Sphaerobolus_stellatus_v1.0 28
Piloderma_croceum_F_1598_v1.0 26
Serpula_lacrymans_var._lacrymans_S7.9_ 14
Coniophora_puteana 19
Hydnomerulius_pinastri_v2.0 19
Paxillus_rubicundulus_Ve08.2h10_v1.0 21
Pisolithus_microcarpus_441_v1.0 18
Pisolithus_tinctorius_Marx_270_v1.0 21
Scleroderma_citrinum_Foug_A_v1.0 15
Coprinopsis_cinerea_okayama7_130_v3 28
Pleurotus_ostreatus_   (Oyster mushroom)   23
Amanita_thiersii_Skay4041_v1.0 17
Amanita_muscaria_Koide_v1.0   (Fly agaric)   17
Galerina_marginata_v1.0 27
Hebeloma_cylindrosporum_h7_v2.0 25
Laccaria_bicolor_S238N-H82_ 19
Agaricus_bisporus_var._bisporus_ 18
Schizophyllum_commune_ 26
Stereum_hirsutum_FP-91666_SS1__v1.0 20
Heterobasidion_annosum_ 13
Gloeophyllum_trabeumv1.0 14
Punctularia_strigosozonata_v1.0 15
Sebacina_vermifera_MAFF_305830_v1.0 21
Fomitiporia_mediterranea_v1.0 14
Tulasnella_calospora_AL13/4D_v1.0 19
Postia_placenta_ 30
Wolfiporia_cocos_MD-104_SS10__v1.0 22
Fomitopsis_pinicolav1.0 27
Fomitopsis_pinicola_FP-58527_SS1_v3.0 25
Phanerochaete_chrysosporium_RP-78_2.1 13
Dichomitus_squalens 20
Trametes_versicolor_v1.0 23
Tremella_mesenterica_   (Witches' butter)   13
Daldinia_eschscholzii_EC12_v1.0 20
Apiospora_montagnei_NRRL_25634_v1.0 27
Magnaporthe_poae_ATCC_64411_22 16
Magnaporthe_grisea_70-15_ 20
Podospora_anserina_ 21
Sporotrichum_thermophile_ATCC_42464_ 17
Thielavia_terrestris_NRRL_8126_ 16
Chaetomium_globosum_CBS_148.51_ 17
Neurospora_tetrasperma_ 18
Neurospora_discreta_FGSC_8579_ 18
Neurospora_crassa_OR74A_ 21
Cryphonectria_parasitica_   (Chestnut blight fungus)   14
Verticillium_albo-atrum_VaMs.102_ 17
Verticillium_dahliae_VdLs.17_ 19
Acremonium_alcalophilumv_1.0 18
Glomerella_graminicola_22 18
Fusarium_graminearum_ 20
Nectria_haematococca_mpVI_ 21
Fusarium_oxysporum_f._sp._lycopersici_4286_ 23
Fusarium_verticillioides_7600_ 21
Trichoderma_asperellum_CBS_433.97_v1.0 16
Trichoderma_atroviride_ 14
Trichoderma_citrinoviride_v1.0 14
Trichoderma_reesei_1.2 14
Trichoderma_virens_Gv29-8_ 12
Trichoderma_longibrachiatum_ATCC_18648_v1.0 14
Trichoderma_harzianum_CBS_226.95_v1.0 16
Amorphotheca_resinae_v1.0   (Creosote fungus)   21
Botrytis_cinerea_B05.10_ 19
Sclerotinia_sclerotiorum_ 24
Blumeria_graminis_22 14
Didymella_exigua_CBS_183.55_v1.0 31
Leptosphaeria_maculans_22 29
Setosphaeria_turcica_v1.0 26
Cochliobolus_miyabeanus_ATCC_44560_v1.0 22
Cochliobolus_victoriae_FI3_v1.0 24
Cochliobolus_carbonum_26-R-13_v1.0 23
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   16
Alternaria_brassicicola_ 19
Cochliobolus_lunatus_m118_v2.0 23
Pyrenophora_teres_f._teres_22 30
Pyrenophora_tritici-repentis_ 22
Stagonospora_nodorum_ 42
Mycosphaerella_graminicola_IPO323_ 27
Zasmidium_cellare_ATCC_36951_v1.0 35
Dothistroma_septosporum 28
Septoria_musiva_v1.0 18
Mycosphaerella_fijiensis_CIRAD86_ 21
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 21
Paracoccidioides_brasiliensis_Pb18_ 16
Coccidioides_posadasii_RMSCC_3488_ 18
Coccidioides_immitis_RS_ 20
Ajellomyces_dermatitidis_SLH14081_ 18
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 17
Microsporum_canis_CBS_113480_ 19
Trichophyton_equinum_CBS_127.97_ 18
Trichophyton_verrucosum_HKI_0517_ 16
Arthroderma_benhamiae_CBS_112371_ 17
Trichophyton_tonsurans_CBS_112818_ 18
Trichophyton_rubrum_CBS_118892_ 17
Uncinocarpus_reesii_1704_ 19
Aspergillus_zonatus_v1.0 12
Penicillium_chrysogenum_Wisconsin_54-1255_ 17
Penicillium_chrysogenum_v1.0 16
Aspergillus_acidus_v1.0 19
Aspergillus_fumigatus_Af293 15
Aspergillus_brasiliensis_v1.0 15
Aspergillus_nidulans_FGSC_A4_ 15
Aspergillus_sydowii_v1.0 19
Aspergillus_versicolor_v1.0 18
Aspergillus_glaucus 13
Aspergillus_carbonarius_ITEM_5010_ 11
Neosartorya_fischeri_NRRL_181_ 15
Aspergillus_terreus_NIH2624_ 8
Aspergillus_tubingensis_v1.0 14
Aspergillus_wentii_v1.0 15
Aspergillus_oryzae_RIB40_ 14
Aspergillus_niger_22 20
Aspergillus_niger_ATCC_1015_ 10
Aspergillus_flavus_NRRL3357_ 12
Aspergillus_clavatus_NRRL_1_ 16
Penicillium_marneffei_ATCC_18224_ 17
Tuber_melanosporum_Mel28_22 13
Tuber_melanosporum_Vittad_   (Perigord truffle)   14
Hansenula_polymorpha_v2.0 10
Dekkera_bruxellensis_CBS_2499_v2.0 9
Pichia_membranifaciensv1.0 12
Candida_tanzawaensis_NRRL_Y-17324__v1.0 10
Candida_dubliniensis_CD36_ 10
Candida_tropicalis_MYA-3404_ 11
Candida_parapsilosis_ 12
Candida_albicans_SC5314 11
Lodderomyces_elongisporus_NRRL_YB-4239_ 12
Babjeviella_inositovora_NRRL_Y-12698_v1.0 12
Pichia_stipitis_CBS_6054_ 8
Candida_guilliermondii_ATCC_6260_ 12
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 9
Debaromyces_hansenii 10
Wickerhamomyces_anomalus 9
Pichia_pastoris_GS115_ 8
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6
Yarrowia_lipolytica_CLIB122 12
Candida_lusitaniae_ATCC_42720_ 13
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 9
Vanderwaltozyma_polyspora_DSM_70294_ 7
Candida_glabrata_CBS138 6
Kluyveromyces_thermotolerans_CBS_6340 9
Lachancea_kluyveri_ 10
Kluyveromyces_waltii 8
Ashbya_gossypii_ATCC_10895_ 7
Zygosaccharomyces_rouxii_ 7
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 7
Schizosaccharomyces_cryophilus_OY26_22 10
Schizosaccharomyces_octosporus_yFS286_ 10
Schizosaccharomyces_japonicus_yFS275_ 7
Schizosaccharomyces_pombe   (Fission yeast)   9
Catenaria_anguillulae_PL171_v1.0 22
Allomyces_macrogynus_ATCC_38327_ 35
Spizellomyces_punctatus_DAOM_BR117_ 24
Dictyostelium_discoideum 19
Dictyostelium_purpureum_ 56
Entamoeba_dispar_1.2 12
Entamoeba_invadens_1.2 9
Entamoeba_histolytica_1 13
Selaginella_moellendorffii_ 63
Pinus_taeda   (Loblolly pine)   94
Picea_abies   (Norway spruce)   91
Eucalyptus_grandis_v201   (Rose gum)   159
Theobroma_cacao_B97-61/B2_v1   (Cacao)   99
Gossypium_raimondii_v221 299
Citrus_clementina_v165 121
Citrus_sinensis_v154   (Sweet orange)   154
Thellungiella_halophila_v173 121
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   179
Capsella_rubella_v183 125
Arabidopsis_lyrata_   (Lyrate rockcress)   123
Arabidopsis_thaliana_10   (Thale cress)   168
Carica_papaya_   (Papaya)   77
Medicago_truncatula_   (Barrel medic)   206
Phaseolus_vulgaris_v186   (French bean)   146
Glycine_max_v109   (Soybean)   281
Cucumis_sativus_v122   (Cucumber)   153
Fragaria_vesca_   (Wild strawberry)   133
Malus_domestica_v196   (Apple)   226
Prunus_persica_v139   (Peach)   89
Linum_usitatissimum_v200   (Flax)   168
Manihot_esculenta_v147   (Cassava)   148
Populus_trichocarpa_v156   (Black cottonwood)   162
Vitis_vinifera_   (Wine grape)   65
Mimulus_guttatus_v140   (Spotted monkey flower)   100
Solanum_lycopersicum_v.2.3   (Tomato)   110
Solanum_tuberosum_   (Potato)   146
Actinidia_chinensis_Hongyang_ 129
Aquilegia_coerulea_v195 129
Triticum_urartu_22 49
Triticum_aestivum_22   (Bread wheat)   159
Aegilops_tauschii_22 66
Brachypodium_distachyon_   (Stiff brome)   141
Oryza_barthii_22   (African wild rice)   112
Oryza_meridionalis_22 126
Oryza_glumaepatula_22 161
Oryza_glaberrima   (African rice)   95
Oryza_punctata_22 156
Oryza_nivara_22 163
Oryza_brachyantha_22   (Malo sina)   82
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   167
Oryza_sativa_v193   (Rice)   162
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   120
Panicum_virgatum_v202   (Switchgrass)   208
Setaria_italica_v164   (Foxtail millet)   142
Zea_mays_subsp._mays_   (Maize)   228
Zea_mays_v181   (Maize)   242
Sorghum_bicolor_   (Sorghum)   132
Musa_balbisiana   (Balbis banana)   160
Musa_acuminata_22   (Wild Malaysian banana)   168
Amborella_trichopoda_22 63
Physcomitrella_patens 31
Coccomyxa_subellipsoidea_sp._C-169_v2 9
Asterochloris_sp._Cgr/DA1pho_v1.0 7
Chlorella_variabilis_sp._NC64A_ 17
Chlorella_vulgaris_ 11
Volvox_carteri_f._nagariensis_ 21
Volvox_carteri_v199 22
Chlamydomonas_reinhardtii_4.0 24
Ostreococcus_sp._RCC809_ 12
Ostreococcus_lucimarinus_CCE9901_ 8
Ostreococcus_tauri_ 6
Bathycoccus_prasinos_ 18
Micromonas_sp._RCC299_ 18
Micromonas_pusilla_CCMP1545_v3.0 21
Cyanidioschyzon_merolae_strain_10D_22 12
Cyanidioschyzon_merolae 13
Porphyridium_purpureum_02_2012 19
Thecamonas_trahens_ATCC_50062_ 29
Bigelowiella_natans_CCMP2755_22 37
Giardia_lamblia_2.3 9
Cyanophora_paradoxa_ 19
Leishmania_mexicana_2.4 22
Leishmania_major_strain_Friedlin_ 24
Leishmania_infantum_JPCM5_2.4 21
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 22
Trypanosoma_vivax_ 19
Trypanosoma_cruzi_strain_CL_Brener 17
Trypanosoma_congolense_2.4 25
Trypanosoma_brucei_gambiense_v4.1 21
Trypanosoma_brucei_TREU927_v4.1 22
Ectocarpus_siliculosus 38
Aureococcus_anophagefferens_ 19
Albugo_laibachii_22 30
Pythium_iwayamai_DAOM_BR242034_22 25
Pythium_arrhenomanes_ATCC_12531_22 24
Pythium_ultimum_v1.7-2 20
Pythium_aphanidermatum_DAOM_BR444_22 19
Pythium_irregulare_DAOM_BR486_22 28
Pythium_vexans_DAOM_BR484_22 23
Phytophthora_ramorum_1.1   (Sudden oak death agent)   22
Phytophthora_sojae_1.1 25
Phytophthora_infestans_T30-4_ 22
Phytophthora_capsici_ 15
Hyaloperonospora_arabidopsidis_22 19
Phaeodactylum_tricornutumCCAP_1055/1 23
Fragilariopsis_cylindrus 54
Thalassiosira_pseudonana_CCMP1335 29
Perkinsus_marinus_ATCC_50983_ 43
Paramecium_tetraurelia_ 124
Tetrahymena_thermophila_SB210_1_ 90
Ichthyophthirius_multifiliis_strain_G5_ 10
Cryptosporidium_hominis 10
Cryptosporidium_muris 9
Cryptosporidium_parvum_Iowa_II 12
Neospora_caninum 21
Toxoplasma_gondii_VEG 21
Toxoplasma_gondii_ME49 22
Toxoplasma_gondii_GT1 21
Babesia_bovis_T2Bo_ 14
Theileria_parva__ 6
Theileria_annulata 6
Plasmodium_falciparum_3D7_ 14
Plasmodium_vivax_SaI-1_7.0 14
Plasmodium_knowlesi_strain_H_ 13
Plasmodium_yoelii_ssp._yoelii_1_ 10
Plasmodium_chabaudi_ 10
Plasmodium_berghei_ANKA_ 10
Symbiodinium_minutum_clade_B1_v1.2 82
Naegleria_gruberi_ 20
Trichomonas_vaginalis_ 13
Guillardia_theta_CCMP2712_v1.0_ 43
Emiliania_huxleyi_CCMP1516_ 65
Candidatus_Phytoplasma_mali 0
Thermobispora_bispora_DSM_43833 1
Streptosporangium_roseum_DSM_43021 1
Streptomyces_coelicolor_A3(2) 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Kribbella_flavida_DSM_17836 1
Candidatus_Amoebophilus_asiaticus_5a2 0
Candidatus_Protochlamydia_amoebophila_UWE25 2
Parachlamydia_acanthamoebae_UV-7 2
Desulfobulbus_propionicus_DSM_2032 1
Haliangium_ochraceum_DSM_14365 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Coxiella_burnetii_Dugway_5J108-111 1
Legionella_pneumophila_str._Corby 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   50
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   41
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   17
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   19
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   34
Cryptococcus_neoformans_var._grubii_H99_ 12
Cryptococcus_neoformans_B-3501A_ 13
Cryptococcus_neoformans_JEC21_ 11
Paracoccidioides_brasiliensis_Pb01_ 15
Paracoccidioides_brasiliensis_Pb03_ 17
Coccidioides_posadasii_str._Silveira_ 17
Coccidioides_immitis_RMSCC_3703_ 14
Coccidioides_immitis_RMSCC_2394_ 18
Coccidioides_immitis_H538.4_ 16
Ajellomyces_dermatitidis_ER-3_ 18
Histoplasma_capsulatum_H143 16
Histoplasma_capsulatum_H88 20
Histoplasma_capsulatum_G186AR 14
Aspergillus_fumigatus_A1163_ 15
Candida_albicans_WO-1_ 11
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 6
Saccharomyces_cerevisiae_FostersO 7
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 7
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 5
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 5
Saccharomyces_cerevisiae_Y10 3
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 9
Batrachochytrium_dendrobatidis_JEL423_ 14
Batrachochytrium_dendrobatidis_JAM81_ 19
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   95
Hordeum_vulgare_22   (Domesticated barley)   157
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   125
Trypanosoma_brucei_Lister_427_v4.1 22
Neospora_caninum_Nc-Liverpool_6.2 21
Plasmodium_falciparum_HB3_ 14
Plasmodium_falciparum_Dd2_ 7
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Actinoplanes_friuliensis_DSM_7358 1
Coxiella_burnetii_CbuG_Q212 1
Legionella_pneumophila_str._Paris 1
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1
Legionella_pneumophila_2300/99_Alcoy 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   34
Pan_troglodytes_69_2.1.4   (Chimpanzee)   29
Gorilla_gorilla_69_3.1   (Western gorilla)   33
Pongo_abelii_69_2   (Sumatran orangutan)   30
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   31
Macaca_mulatta_69_1   (Rhesus monkey)   32
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   28
Otolemur_garnettii_69_3   (Small-eared galago)   28
Microcebus_murinus_69_1   (Gray mouse lemur)   22
Rattus_norvegicus_69_3.4   (Norway rat)   29
Mus_musculus_69_38   (House mouse)   32
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   28
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   26
Cavia_porcellus_69_3   (Domestic guinea pig)   29
Oryctolagus_cuniculus_69_2   (Rabbit)   31
Ochotona_princeps_69   (American pika)   28
Tupaia_belangeri_69   (Northern tree shrew)   25
Sus_scrofa_69_10.2   (Pig)   31
Bos_taurus_69_3.1   (Cattle)   31
Vicugna_pacos_69_1   (Alpaca)   22
Tursiops_truncatus_69_1   (Bottlenose dolphin)   29
Mustela_putorius_furo_69_1.0   (Domestic ferret)   28
Ailuropoda_melanoleuca_69_1   (Giant panda)   26
Canis_familiaris_69_3.1   (Dog)   33
Felis_catus_69   (Domestic cat)   24
Equus_caballus_69_2   (Horse)   26
Myotis_lucifugus_69_2.0   (Little brown bat)   30
Pteropus_vampyrus_69_1   (Large flying fox)   31
Sorex_araneus_69_1   (European shrew)   21
Erinaceus_europaeus_69   (Western European hedgehog)   22
Procavia_capensis_69_1   (Cape rock hyrax)   27
Loxodonta_africana_69_3   (African savanna elephant)   37
Echinops_telfairi_69   (Small Madagascar hedgehog)   27
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   18
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   21
Macropus_eugenii_69_1.0   (Tammar wallaby)   18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   41
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   29
Ornithorhynchus_anatinus_69_5   (Platypus)   22
Petromyzon_marinus_69_7.0   (Sea lamprey)   5
Meleagris_gallopavo_69_2   (Turkey)   20
Gallus_gallus_69_2   (Chicken)   20
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   21
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   33
Anolis_carolinensis_69_2.0   (Green anole)   23
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   25
Latimeria_chalumnae_69_1   (Coelacanth)   29
Gadus_morhua_69_1   (Atlantic cod)   19
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   28
Takifugu_rubripes_69_4   (Torafugu)   29
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   27
Oryzias_latipes_69_1   (Japanese medaka)   24
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   28
Oreochromis_niloticus_69_1.0   (Nile tilapia)   32
Danio_rerio_69_9   (Zebrafish)   41
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   11
Ciona_intestinalis_69   (Vase tunicate)   13
Drosophila_melanogaster_69_5   (Fruit fly)   23
Caenorhabditis_elegans_69_215   (Roundworm)   29
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   122

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   112
Homo_sapiens__(NCBI_version)   (Human)   54
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   34
Loa_loa_v3.3_(Request)   (Eye worm)   16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   13
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   15
Moniliophthora_perniciosa_FA553__(Genome_survey) 7
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   9
Lotus_japonicus__(Early_assembly) 86
Malus_x_domestica_(Duplicate)   (Apple)   226
Ricinus_communis__(Early_assembly)   (Castor bean)   93
Nicotiana_benthamiana_0.4.4_(Early_draft) 189
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   108
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   110
Phoenix_dactylifera__(Early_draft)   (Date palm)   42
Guillardia_theta_(nucleomorph) 1
Protozoadb_2010_08_(Protozoadb) 453
STRING_v9.0.5_(STRING) 3118
NCBI_2017_08_genome 40649
Uniprot_2018_03_genome 215085
NCBI_viral_sequences_(Viral) 85
TargetDB__(Targets) 78
Protein_Data_Bank_(all_PDB_sequenc) 1
UniProt__viral_sequences_(Viral) 79

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