SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57997,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57997 - Tropomyosin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   10
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   6
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   7
Macaca_mulatta_76_1   (Rhesus monkey)   10
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_76_3   (Small-eared galago)   9
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   9
Mus_musculus_76_38   (House mouse)   21
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   5
Cavia_porcellus_76_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   3
Tupaia_belangeri_76   (Northern tree shrew)   4
Sus_scrofa_76_10.2   (Pig)   5
Bos_taurus_76_3.1   (Cattle)   8
Ovis_aries_76_3.1   (Sheep)   7
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   7
Canis_familiaris_76_3.1   (Dog)   12
Felis_catus_76_6.2   (Domestic cat)   6
Equus_caballus_76_2   (Horse)   11
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   4
Procavia_capensis_76_1   (Cape rock hyrax)   3
Loxodonta_africana_76_3   (African savanna elephant)   8
Echinops_telfairi_76   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_76_5   (Platypus)   8
Saccoglossus_kowalevskii_v3.0 25
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   5
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   7
Xenopus_laevis_   (African clawed frog)   5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_76_1   (Coelacanth)   12
Lepisosteus_oculatus_76   (Spotted gar)   16
Gadus_morhua_76_1   (Atlantic cod)   5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   8
Takifugu_rubripes_76_4   (Torafugu)   15
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6
Oryzias_latipes_76_1   (Japanese medaka)   6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   9
Poecilia_formosa_76   (Amazon molly)   6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9
Astyanax_mexicanus_76   (Mexican tetra)   12
Danio_rerio_76_9   (Zebrafish)   13
Oikopleura_dioica 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_76   (Vase tunicate)   2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   16
Adineta_vaga 7
Octopus_bimaculoides_280 13
Crassostrea_gigas_22   (Pacific oyster)   11
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 0
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   4
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   4
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 2
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 4
Drosophila_suzukii 4
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   8
Drosophila_erecta_1.3 3
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 0
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   7
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 4
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   7
Acropora_digitifera_v1.0 7
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 8
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 6
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 4
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 2
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Rhodotorula_graminis_WP1_v1.0 2
Microbotryum_violaceum_22 0
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 3
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 10
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 4
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 3
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 3
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 3
Magnaporthe_grisea_70-15_ 6
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 4
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 2
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 4
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 4
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 4
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 5
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 1
Candida_albicans_SC5314 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 0
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 10
Spizellomyces_punctatus_DAOM_BR117_ 7
Dictyostelium_discoideum 2
Entamoeba_invadens_1.2 0
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   17
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7
Gossypium_raimondii_v221 56
Citrus_clementina_v165 13
Citrus_sinensis_v154   (Sweet orange)   19
Thellungiella_halophila_v173 13
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   9
Capsella_rubella_v183 11
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   15
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   29
Phaseolus_vulgaris_v186   (French bean)   21
Glycine_max_v109   (Soybean)   28
Cucumis_sativus_v122   (Cucumber)   10
Fragaria_vesca_   (Wild strawberry)   10
Malus_domestica_v196   (Apple)   18
Prunus_persica_v139   (Peach)   9
Linum_usitatissimum_v200   (Flax)   18
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   12
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   7
Solanum_tuberosum_   (Potato)   14
Actinidia_chinensis_Hongyang_ 8
Aquilegia_coerulea_v195 29
Triticum_urartu_22 9
Triticum_aestivum_22   (Bread wheat)   15
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   6
Oryza_barthii_22   (African wild rice)   11
Oryza_meridionalis_22 12
Oryza_glumaepatula_22 12
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 12
Oryza_nivara_22 13
Oryza_brachyantha_22   (Malo sina)   10
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   18
Oryza_sativa_v193   (Rice)   17
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Panicum_virgatum_v202   (Switchgrass)   8
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   10
Zea_mays_v181   (Maize)   11
Sorghum_bicolor_   (Sorghum)   5
Musa_balbisiana   (Balbis banana)   10
Musa_acuminata_22   (Wild Malaysian banana)   6
Amborella_trichopoda_22 1
Physcomitrella_patens 3
Coccomyxa_subellipsoidea_sp._C-169_v2 7
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 5
Chlorella_vulgaris_ 7
Volvox_carteri_f._nagariensis_ 13
Volvox_carteri_v199 13
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 5
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 14
Bigelowiella_natans_CCMP2755_22 2
Giardia_lamblia_2.3 6
Cyanophora_paradoxa_ 3
Leishmania_mexicana_2.4 4
Leishmania_major_strain_Friedlin_ 3
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 5
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 3
Aureococcus_anophagefferens_ 4
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7
Phytophthora_sojae_1.1 6
Phytophthora_capsici_ 4
Hyaloperonospora_arabidopsidis_22 1
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 9
Paramecium_tetraurelia_ 21
Tetrahymena_thermophila_SB210_1_ 8
Cryptosporidium_hominis 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 0
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 0
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 4
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 6
Naegleria_gruberi_ 3
Trichomonas_vaginalis_ 14
Guillardia_theta_CCMP2712_v1.0_ 2
Leptolyngbya_sp._PCC_7376 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Cyanothece_sp._PCC_8802 1
Calothrix_sp._PCC_7507 2
Anabaena_variabilis_ATCC_29413 1
Nostoc_sp._PCC_7120 1
Aster_yellows_witches'-broom_phytoplasma_AYWB 1
Mycoplasma_mycoides_subsp._capri_LC_str._95010 4
Mycoplasma_capricolum_subsp._capricolum_ATCC_27343 1
Slackia_heliotrinireducens_DSM_20476 1
Frankia_symbiont_of_Datisca_glomerata 1
Thermomonospora_curvata_DSM_43183 1
Mycobacterium_chubuense_NBB4 1
Isoptericola_variabilis_225 0
Gardnerella_vaginalis_409-05 1
Bifidobacterium_dentium_Bd1 1
Thermomicrobium_roseum_DSM_5159 1
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_proteolyticus_MRP 1
Anaerococcus_prevotii_DSM_20548 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 1
Clostridium_thermocellum_ATCC_27405 1
Ruminococcus_sp. 1
Ruminococcus_bromii 1
Ruminococcus_albus_7 1
Desulfotomaculum_kuznetsovii_DSM_6115 0
Acetobacterium_woodii_DSM_1030 0
Clostridium_difficile_630 0
Clostridium_phytofermentans_ISDg 1
[Ruminococcus]_torques 1
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 1
Butyrivibrio_proteoclasticus_B316 1
Butyrivibrio_fibrisolvens 1
Syntrophothermus_lipocalidus_DSM_12680 0
Clostridium_perfringens_ATCC_13124 1
Tepidanaerobacter_acetatoxydans_Re1 1
Acetohalobium_arabaticum_DSM_5501 1
Halothermothrix_orenii_H_168 0
Enterococcus_faecalis_62 1
Leuconostoc_citreum_KM20 1
Leuconostoc_gasicomitatum_LMG_18811 0
Lactobacillus_crispatus_ST1 1
Lactobacillus_rhamnosus_Lc_705 1
Lactobacillus_johnsonii_FI9785 1
Lactobacillus_salivarius_CECT_5713 1
Lactobacillus_fermentum_IFO_3956 1
Lactobacillus_reuteri_DSM_20016 2
Lactobacillus_gasseri_ATCC_33323 3
Streptococcus_uberis_0140J 1
Streptococcus_parauberis_KCTC_11537 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_polymyxa_M1 0
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_atrophaeus_1942 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_cereus_03BB102 1
Bacillus_megaterium_DSM_319 1
Haliscomenobacter_hydrossis_DSM_1100 0
Bacteroides_salanitronis_DSM_18170 1
Bacteroides_fragilis_YCH46 1
Chlamydia_psittaci_01DC11 1
Rhodopirellula_baltica_SH_1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Borrelia_garinii_PBi 1
Borrelia_duttonii_Ly 1
Borrelia_turicatae_91E135 1
Borrelia_hermsii_DAH 1
Treponema_primitia_ZAS-2 0
Treponema_succinifaciens_DSM_2489 0
Thermodesulfobacterium_sp._OPB45 0
Flexistipes_sinusarabici_DSM_4947 0
Mesotoga_prima_MesG1.Ag.4.2 1
Fervidobacterium_pennivorans_DSM_9078 2
Thermotoga_thermarum_DSM_5069 1
Thermotoga_neapolitana_DSM_4359 1
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 1
Campylobacter_curvus_525.92 1
Campylobacter_concisus_13826 1
Nitratiruptor_sp._SB155-2 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfovibrio_magneticus_RS-1 0
Geobacter_uraniireducens_Rf4 1
Sorangium_cellulosum_'So_ce_56' 0
Anaeromyxobacter_sp._Fw109-5 0
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 1
Burkholderia_phymatum_STM815 0
Burkholderia_sp._RPE64 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_gladioli_BSR3 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Asticcacaulis_excentricus_CB_48 0
Novosphingobium_aromaticivorans_DSM_12444 0
Hirschia_baltica_ATCC_49814 0
Dinoroseobacter_shibae_DFL_12 1
Tistrella_mobilis_KA081020-065 1
Micavibrio_aeruginosavorus_ARL-13 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 1
Ochrobactrum_anthropi_ATCC_49188 1
Brucella_microti_CCM_4915 1
Brucella_pinnipedialis_B2/94 1
Brucella_canis_ATCC_23365 1
Brucella_suis_ATCC_23445 1
Brucella_melitensis_ATCC_23457 1
Brucella_ovis_ATCC_25840 1
Brucella_abortus_S19 1
Rhodomicrobium_vannielii_ATCC_17100 0
Cellvibrio_japonicus_Ueda107 1
Vibrio_sp._Ex25 0
Vibrio_harveyi_ATCC_BAA-1116 1
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 1
Marinobacter_adhaerens_HP15 0
Alteromonas_sp._SN2 1
Methylococcus_capsulatus_str._Bath 0
Alkalilimnicola_ehrlichii_MLHE-1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Thioalkalivibrio_sp._K90mix 1
Moraxella_catarrhalis_RH4 0
Methylophaga_sp._JAM1 1
Thermogladius_cellulolyticus_1633 1
Pyrobaculum_sp._1860 1
Methanohalobium_evestigatum_Z-7303 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 0
Salinarchaeum_sp._Harcht-Bsk1 1
Natrialba_magadii_ATCC_43099 2
Halomicrobium_mukohataei_DSM_12286 0
Natronomonas_pharaonis_DSM_2160 1
Aciduliprofundum_boonei_T469 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   4
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 4
Cryptococcus_neoformans_JEC21_ 2
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_RM11-1a 2
Saccharomyces_cerevisiae_RM11-1a_ 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8
Hordeum_vulgare_22   (Domesticated barley)   15
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   10
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 0
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._CC9902 1
Prochlorococcus_marinus_str._MIT_9313 1
Prochlorococcus_marinus_str._MIT_9303 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 4
Cyanothece_sp._PCC_8801 1
Cyanobacterium_aponinum_PCC_10605 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Candidatus_Mycoplasma_haemominutum_'Birmingham_1' 1
Streptomyces_collinus_Tu_365 1
Gardnerella_vaginalis_HMP9231 2
Gardnerella_vaginalis_ATCC_14019 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Dehalococcoides_mccartyi_BTF08 1
Thermus_thermophilus_HB8 1
Erysipelothrix_rhusiopathiae_SY1027 1
Clostridium_thermocellum_DSM_1313 1
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Roseburia_intestinalis_XB6B4 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 2
Lactobacillus_casei_LOCK919 2
Lactobacillus_casei_str._Zhang 2
Lactobacillus_rhamnosus_LOCK908 1
Lactobacillus_rhamnosus_LOCK900 1
Lactobacillus_rhamnosus_ATCC_8530 1
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_johnsonii_N6.2 2
Lactobacillus_johnsonii_DPC_6026 1
Lactobacillus_johnsonii_NCC_533 1
Lactobacillus_salivarius_UCC118 0
Lactobacillus_fermentum_CECT_5716 1
Lactobacillus_reuteri_TD1 2
Lactobacillus_reuteri_JCM_1112 2
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1
Lactococcus_lactis_subsp._lactis_IO-1 1
Lactococcus_lactis_subsp._lactis_Il1403 1
Streptococcus_anginosus_C1051 1
Streptococcus_suis_TL13 1
Streptococcus_suis_D12 1
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 2
Bacillus_amyloliquefaciens_LL3 2
Bacillus_amyloliquefaciens_TA208 2
Bacillus_amyloliquefaciens_DSM_7 2
Bacillus_licheniformis_9945A 0
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 0
Bacillus_thuringiensis_HD-771 3
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 4
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 2
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_14579 1
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Alistipes_shahii_WAL_8301 1
Chlamydia_psittaci_01DC12 1
Chlamydia_psittaci_WC 1
Chlamydia_psittaci_M56 2
Chlamydia_psittaci_WS/RT/E30 1
Chlamydia_psittaci_VS225 2
Chlamydia_psittaci_MN 1
Chlamydia_psittaci_GR9 1
Chlamydia_psittaci_84/55 1
Chlamydia_psittaci_08DC60 1
Chlamydia_psittaci_02DC15 1
Chlamydia_psittaci_C19/98 1
Chlamydia_psittaci_NJ1 1
Chlamydia_psittaci_CP3 1
Chlamydophila_psittaci_RD1 1
Chlamydia_psittaci_Mat116 2
Chlamydophila_psittaci_6BC 1
Chlamydophila_psittaci_6BC 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Borrelia_garinii_NMJW1 1
Borrelia_garinii_BgVir 1
Borrelia_miyamotoi_LB-2001 1
Bdellovibrio_exovorus_JSS 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Helicobacter_pylori_Aklavik86 1
Helicobacter_pylori_ELS37 1
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_phenoliruptrix_BR3459a 1
Burkholderia_sp._YI23 0
Burkholderia_sp._CCGE1001 1
Brucella_ceti_TE10759-12 1
Brucella_canis_HSK_A52141 1
Brucella_suis_VBI22 1
Brucella_suis_1330 1
Brucella_suis_1330 1
Brucella_melitensis_NI 1
Brucella_melitensis_M5-90 1
Brucella_melitensis_M28 1
Brucella_abortus_A13334 1
Brucella_melitensis_biovar_Abortus_2308 1
Brucella_abortus_bv._1_str._9-941 1
Glaciecola_psychrophila_170 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_str._'English_Channel_615' 1
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_ATCC_27126 1
Thioalkalivibrio_nitratireducens_DSM_14787 0
Proteus_mirabilis_BB2000 1
Escherichia_coli_042 0
Pseudomonas_putida_NBRC_14164 0
Acinetobacter_lwoffii__SH145 0
Methanomethylovorans_hollandica_DSM_15978 1
Methanosarcina_mazei_Tuc01 0
Archaeoglobus_sulfaticallidus_PM70-1 0
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 0
Halorhabdus_tiamatea_SARL4B 2

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   9
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   10
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6
Cavia_porcellus_69_3   (Domestic guinea pig)   5
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   3
Tupaia_belangeri_69   (Northern tree shrew)   4
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   7
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   8
Myotis_lucifugus_69_2.0   (Little brown bat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   4
Procavia_capensis_69_1   (Cape rock hyrax)   3
Loxodonta_africana_69_3   (African savanna elephant)   5
Echinops_telfairi_69   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   6
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   4
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_69_2.0   (Green anole)   4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   11
Gadus_morhua_69_1   (Atlantic cod)   5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   9
Oreochromis_niloticus_69_1.0   (Nile tilapia)   6
Danio_rerio_69_9   (Zebrafish)   8
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   2
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   10

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   9
Homo_sapiens__(NCBI_version)   (Human)   3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   10
Loa_loa_v3.3_(Request)   (Eye worm)   3
Lotus_japonicus__(Early_assembly) 8
Malus_x_domestica_(Duplicate)   (Apple)   18
Ricinus_communis__(Early_assembly)   (Castor bean)   5
Nicotiana_benthamiana_0.4.4_(Early_draft) 20
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   7
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 6
UniProt__viral_sequences_(Viral) 8
Protozoadb_2010_08_(Protozoadb) 75
STRING_v9.0.5_(STRING) 456
Uniprot_2018_03_genome 36195
NCBI_2017_08_genome 10633
Core_Eukaryotic_Genes_458_(CEGMA) 0
TargetDB__(Targets) 9
NCBI_viral_sequences_(Viral) 15

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