SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,63418,53623,53244 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63418 - MurE/MurF N-terminal domain
53623 - MurD-like peptide ligases, catalytic domain
53244 - MurD-like peptide ligases, peptide-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 3
Citrus_clementina_v165 1
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Amborella_trichopoda_22 0
Physcomitrella_patens 2
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Chlamydomonas_reinhardtii_4.0 0
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanophora_paradoxa_ 1
Pseudanabaena_sp._PCC_7367 1
Nostoc_sp._PCC_7524 1
Kineococcus_radiotolerans_SRS30216 0
Thermobifida_fusca_YX 1
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 1
Actinosynnema_mirum_DSM_43827 1
Saccharomonospora_viridis_DSM_43017 1
Kribbella_flavida_DSM_17836 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_erythropolis_PR4 1
Nocardia_farcinica_IFM_10152 1
Amycolicicoccus_subflavus_DQS3-9A1 1
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_ulcerans_Agy99 1
Jonesia_denitrificans_DSM_20603 1
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_chlorophenolicus_A6 1
Rothia_mucilaginosa_DY-18 0
Rothia_dentocariosa_ATCC_17931 1
Arthrobacter_sp._Rue61a 1
Arthrobacter_sp._FB24 1
Micrococcus_luteus_NCTC_2665 0
Bifidobacterium_bifidum_S17 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1
Heliobacterium_modesticaldum_Ice1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Pelodictyon_phaeoclathratiforme_BU-1 0
Salinibacter_ruber_M8 1
Cytophaga_hutchinsonii_ATCC_33406 0
Solitalea_canadensis_DSM_3403 0
Coraliomargarita_akajimensis_DSM_45221 1
Turneriella_parva_DSM_21527 1
Spirochaeta_caldaria_DSM_7334 1
Desulfomonile_tiedjei_DSM_6799 0
Desulfurivibrio_alkaliphilus_AHT2 1
Anaeromyxobacter_sp._Fw109-5 1
Erythrobacter_litoralis_HTCC2594 1
Pseudovibrio_sp._FO-BEG1 0
Granulibacter_bethesdensis_CGDNIH1 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Prochlorococcus_marinus_str._MIT_9303 1
Frankia_sp._CcI3 1
Streptomyces_albus_J1074 0
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Saccharothrix_espanaensis_DSM_44229 1
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Tropheryma_whipplei_str._Twist 1
Gardnerella_vaginalis_HMP9231 1
Gardnerella_vaginalis_ATCC_14019 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1
Streptococcus_parasanguinis_FW213 1
Bacillus_licheniformis_9945A 1
Salinibacter_ruber_DSM_13855 1
Desulfocapsa_sulfexigens_DSM_10523 0

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Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
Protein_Data_Bank_(all_PDB_sequenc) 8
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 33
Uniprot_2018_03_genome 7890
NCBI_2017_08_genome 6408

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