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Domain combinations for _gap_,63748,_gap_,57903,_gap_,82199 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

63748 - Tudor/PWWP/MBT
57903 - FYVE/PHD zinc finger
82199 - SET domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Bombyx_mori_   (Domestic silkworm)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Gossypium_raimondii_v221 3
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   2
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   2
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   4
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   2
Aquilegia_coerulea_v195 1
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   1
Oryza_barthii_22   (African wild rice)   4
Oryza_glumaepatula_22 10
Oryza_punctata_22 4
Oryza_nivara_22 4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   1
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   2
Volvox_carteri_f._nagariensis_ 0
Chlamydomonas_reinhardtii_4.0 0

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Strains
Genome     Number
Hordeum_vulgare_22   (Domesticated barley)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
STRING_v9.0.5_(STRING) 4
NCBI_2017_08_genome 76
Uniprot_2018_03_genome 2337

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