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Domain combinations for _gap_,81296,52540,48403,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81296 - E set domains
52540 - P-loop containing nucleoside triphosphate hydrolases
48403 - Ankyrin repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   5
Gossypium_raimondii_v221 18
Citrus_clementina_v165 6
Citrus_sinensis_v154   (Sweet orange)   19
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   9
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   17
Phaseolus_vulgaris_v186   (French bean)   9
Glycine_max_v109   (Soybean)   9
Cucumis_sativus_v122   (Cucumber)   5
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   6
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   8
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   8
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   6
Solanum_lycopersicum_v.2.3   (Tomato)   6
Solanum_tuberosum_   (Potato)   4
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 10
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   10
Aegilops_tauschii_22 5
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   10
Oryza_meridionalis_22 5
Oryza_glumaepatula_22 13
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 9
Oryza_nivara_22 10
Oryza_brachyantha_22   (Malo sina)   6
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5
Oryza_sativa_v193   (Rice)   5
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   7
Panicum_virgatum_v202   (Switchgrass)   13
Setaria_italica_v164   (Foxtail millet)   10
Zea_mays_subsp._mays_   (Maize)   6
Zea_mays_v181   (Maize)   8
Sorghum_bicolor_   (Sorghum)   6
Musa_balbisiana   (Balbis banana)   5
Musa_acuminata_22   (Wild Malaysian banana)   7
Amborella_trichopoda_22 4
Albugo_laibachii_22 2
Phytophthora_sojae_1.1 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Arabidopsis_thaliana_10   (Thale cress)   5

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 4
Malus_x_domestica_(Duplicate)   (Apple)   6
Ricinus_communis__(Early_assembly)   (Castor bean)   5
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_2017_08_genome 1151
STRING_v9.0.5_(STRING) 42
Uniprot_2018_03_genome 13216

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