SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,81383,50965 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain
50965 - Galactose oxidase, central domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Sorex_araneus_76_1   (European shrew)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Dictyostelium_discoideum 0
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4
Gossypium_raimondii_v221 4
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   3
Thellungiella_halophila_v173 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   6
Medicago_truncatula_   (Barrel medic)   7
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   6
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   4
Malus_domestica_v196   (Apple)   4
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   3
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   5
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   8
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 9
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   5
Aegilops_tauschii_22 9
Brachypodium_distachyon_   (Stiff brome)   5
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 6
Oryza_glumaepatula_22 6
Oryza_glaberrima   (African rice)   3
Oryza_punctata_22 3
Oryza_nivara_22 8
Oryza_brachyantha_22   (Malo sina)   4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   9
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   4
Zea_mays_v181   (Maize)   4
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   3
Amborella_trichopoda_22 5
Physcomitrella_patens 8
Ostreococcus_sp._RCC809_ 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4

Longest transcript per gene
Genome     Number
Sorex_araneus_69_1   (European shrew)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Arabidopsis_thaliana_10   (Thale cress)   6

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   4
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 37
NCBI_2017_08_genome 365
Uniprot_2018_03_genome 2622

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