SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,81383,50998 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain
50998 - Quinoprotein alcohol dehydrogenase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Sorex_araneus_76_1   (European shrew)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Lottia_gigantea_   (Owl limpet)   0
Daphnia_pulex_   (Common water flea)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Trichoplax_adhaerens_ 1
Mortierella_verticillata_NRRL_6337_ 2
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 3
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 1
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 2
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Galerina_marginata_v1.0 2
Agaricus_bisporus_var._bisporus_ 1
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 1
Postia_placenta_ 2
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 1
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Trichoderma_citrinoviride_v1.0 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_rubrum_CBS_118892_ 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_wentii_v1.0 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Candida_tropicalis_MYA-3404_ 1
Candida_guilliermondii_ATCC_6260_ 1
Pichia_pastoris_GS115_ 1
Candida_glabrata_CBS138 1
Ashbya_gossypii_ATCC_10895_ 1
Kluyveromyces_lactis 0
Catenaria_anguillulae_PL171_v1.0 0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   1
Vitis_vinifera_   (Wine grape)   1
Aquilegia_coerulea_v195 5
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 2
Oryza_barthii_22   (African wild rice)   0
Oryza_glumaepatula_22 1
Oryza_punctata_22 2
Zea_mays_v181   (Maize)   2
Musa_balbisiana   (Balbis banana)   2
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 1
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1

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Strains
Genome     Number
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Saccharomyces_cerevisiae_Vin13 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Neospora_caninum_Nc-Liverpool_6.2 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Sorex_araneus_69_1   (European shrew)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   2
Lotus_japonicus__(Early_assembly) 0
STRING_v9.0.5_(STRING) 19
NCBI_2017_08_genome 157
Uniprot_2018_03_genome 1992
Protozoadb_2010_08_(Protozoadb) 2
TargetDB__(Targets) 1

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