SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,81901,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81901 - HCP-like
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Danio_rerio_76_9   (Zebrafish)   1
Oikopleura_dioica 1
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 0
Heliconius_melpomene_   (Postman butterfly)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_yakuba_1.3 0
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Strigamia_maritima_22 1
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Hymenolepis_microstoma_ 1
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 0
Amphimedon_queenslandica 1
Proterospongia_sp._ATCC_50818_ 1
Mortierella_verticillata_NRRL_6337_ 1
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 0
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Hydnomerulius_pinastri_v2.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 0
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 0
Botrytis_cinerea_B05.10_ 0
Blumeria_graminis_22 0
Setosphaeria_turcica_v1.0 0
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 0
Aspergillus_acidus_v1.0 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_versicolor_v1.0 0
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_flavus_NRRL3357_ 1
Hansenula_polymorpha_v2.0 0
Pichia_membranifaciensv1.0 1
Candida_dubliniensis_CD36_ 0
Pichia_stipitis_CBS_6054_ 0
Vanderwaltozyma_polyspora_DSM_70294_ 1
Kluyveromyces_waltii 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   9
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 4
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   2
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   2
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 4
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 3
Oryza_glumaepatula_22 2
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 1
Oryza_nivara_22 3
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4
Oryza_sativa_v193   (Rice)   4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 3
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Bathycoccus_prasinos_ 1
Porphyridium_purpureum_02_2012 1
Bigelowiella_natans_CCMP2755_22 3
Giardia_lamblia_2.3 1
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_cruzi_strain_CL_Brener 0
Pythium_ultimum_v1.7-2 1
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_infestans_T30-4_ 1
Fragilariopsis_cylindrus 1
Thalassiosira_pseudonana_CCMP1335 0
Paramecium_tetraurelia_ 1
Tetrahymena_thermophila_SB210_1_ 3
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 0
Pseudanabaena_sp._PCC_7367 1
Gloeocapsa_sp._PCC_7428 1
Stackebrandtia_nassauensis_DSM_44728 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Deinococcus_radiodurans_R1 1
Oceanithermus_profundus_DSM_14977 1
Thermus_scotoductus_SA-01 0
Streptococcus_infantarius_subsp._infantarius_CJ18 1
Ignavibacterium_album_JCM_16511 0
Chloroherpeton_thalassium_ATCC_35110 1
Haliscomenobacter_hydrossis_DSM_1100 0
Saprospira_grandis_str._Lewin 0
Flexibacter_litoralis_DSM_6794 1
Cyclobacterium_marinum_DSM_745 1
Spirosoma_linguale_DSM_74 1
Paludibacter_propionicigenes_WB4 0
Porphyromonas_asaccharolytica_DSM_20707 0
Porphyromonas_gingivalis_ATCC_33277 0
Sphingobacterium_sp._21 0
Owenweeksia_hongkongensis_DSM_17368 1
Lacinutrix_sp._5H-3-7-4 0
Maribacter_sp._HTCC2170 0
Croceibacter_atlanticus_HTCC2559 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Opitutus_terrae_PB90-1 1
Turneriella_parva_DSM_21527 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Borrelia_garinii_PBi 1
Borrelia_recurrentis_A1 1
Sphaerochaeta_globus_str._Buddy 1
Treponema_denticola_ATCC_35405 1
Desulfurispirillum_indicum_S5 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Candidatus_Methylomirabilis_oxyfera 1
Arcobacter_nitrofigilis_DSM_7299 1
Helicobacter_mustelae_12198 0
Sorangium_cellulosum_'So_ce_56' 0
Myxococcus_fulvus_HW-1 0
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 1
Bordetella_petrii_DSM_12804 0
Rhizobium_etli_CIAT_652 0
Agrobacterium_sp._H13-3 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Cellvibrio_japonicus_Ueda107 1
Shewanella_woodyi_ATCC_51908 0
Hahella_chejuensis_KCTC_2396 0
Nitrosococcus_watsonii_C-113 0
Nitrosococcus_halophilus_Nc4 1
Nitrosococcus_oceani_ATCC_19707 0
Methanococcus_voltae_A3 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Chamaesiphon_minutus_PCC_6605 1
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 0
Desulfitobacterium_hafniense_DCB-2 0
Streptococcus_lutetiensis_033 1
Bacillus_megaterium_QM_B1551 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 0
Borrelia_garinii_BgVir 1
Borrelia_afzelii_HLJ01 1
Borrelia_burgdorferi_N40 2
Borrelia_miyamotoi_LB-2001 1
Treponema_pedis_str._T_A4 1
Spirochaeta_thermophila_DSM_6578 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 0
Fusobacterium_nucleatum_subsp._animalis_4_8 1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 1
Helicobacter_pylori_SouthAfrica7 0
Helicobacter_pylori_2017 0
Helicobacter_pylori_2018 0
Helicobacter_pylori_908 0
Desulfobacula_toluolica_Tol2 1
Nitrosomonas_sp._AL212 0
Sulfuricella_denitrificans_skB26 0
Mannheimia_succiniciproducens_MBEL55E 0
Thalassolituus_oleivorans_MIL-1 1
Proteus_mirabilis_BB2000 0
Escherichia_coli_NA114 0
Escherichia_coli_O55:H7_str._RM12579 0
Escherichia_coli_O55:H7_str._CB9615 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_O111:H-_str._11128 0
Escherichia_coli_BW2952 0
Pseudomonas_putida_H8234 0
Acinetobacter_junii__SH205 0

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Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Tupaia_belangeri_69   (Northern tree shrew)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Felis_catus_69   (Domestic cat)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Gadus_morhua_69_1   (Atlantic cod)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 1
Uniprot_2018_03_genome 5952
Protein_Data_Bank_(all_PDB_sequenc) 0
NCBI_2017_08_genome 1745
Protozoadb_2010_08_(Protozoadb) 6
TargetDB__(Targets) 6
STRING_v9.0.5_(STRING) 49

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