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Domain combinations for _gap_,90229,_gap_,90229,57756 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
90229 - CCCH zinc finger
57756 - Retrovirus zinc finger-like domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Rattus_norvegicus_76_5.0   (Norway rat)   3
Mus_musculus_76_38   (House mouse)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Gallus_gallus_76_4   (Chicken)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oikopleura_dioica 1
Lottia_gigantea_   (Owl limpet)   0
Megaselia_scalaris_22 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   1
Daphnia_pulex_   (Common water flea)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_elegans_76_235   (Roundworm)   0

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Rattus_norvegicus_69_3.4   (Norway rat)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 8
Uniprot_2018_03_genome 456
NCBI_2017_08_genome 221
Protein_Data_Bank_(all_PDB_sequenc) 1

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