SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,54292,54862,53706 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54292 - 2Fe-2S ferredoxin-like
54862 - 4Fe-4S ferredoxins
53706 - Formate dehydrogenase/DMSO reductase, domains 1-3

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

148 sequences contain the _gap_,54292,54862,53706 domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Myxococcus fulvus HW-1: gi|338533913|ref|YP_004667247.1|

Corallococcus coralloides DSM 2259: gi|383457277|ref|YP_005371266.1|

Stigmatella aurantiaca DW4/3-1: gi|310820738|ref|YP_003953096.1|

Anaeromyxobacter sp. Fw109-5: gi|153004161|ref|YP_001378486.1|

Thecamonas trahens ATCC 50062 : AMSG_12225T0

Bathycoccus prasinos : Bathy16g00550

Volvox carteri v199: Vocar20000347m|PACid:23131502

Volvox carteri f. nagariensis : jgi|Volca1|75683|estExt_Genewise1.C_350118

Chlorella vulgaris : jgi|Chlvu1|44329|estExt_Genewise1Plus.C_150074

Physcomitrella patens: jgi|Phypa1_1|70580|fgenesh1_pg.scaffold_28000185

Physcomitrella patens: jgi|Phypa1_1|168248|estExt_fgenesh1_pg.C_1700046

Amborella trichopoda 22: ERN11369

Musa balbisiana: ITC1587_Bchr1_P01961

Sorghum bicolor : jgi|Sorbi1|5048279|Sb01g010210

Zea mays v181: GRMZM2G145854_T01|PACid:20876471

Zea mays v181: GRMZM2G126038_T01|PACid:20865804

Zea mays subsp. mays : GRMZM2G145854_P01

Zea mays subsp. mays : GRMZM2G126038_P01

Setaria italica v164: Si034403m|PACid:19684954

Panicum virgatum v202: Pavirv00014768m|PACid:23779599

Panicum virgatum v202: Pavirv00009065m|PACid:23791879

Phyllostachys heterocyclavar. pubescens: PH01002851G0110

Phyllostachys heterocyclavar. pubescens: PH01004743G0090

Oryza sativa v193: LOC_Os03g50540.1|PACid:21915071

Oryza sativa ssp. japonica 5.0: LOC_Os03g50540.1|13103.m05498|protein

Oryza nivara 22: ONIVA03G33120.1

Oryza punctata 22: OPUNC03G29010.1

Oryza meridionalis 22: OMERI03G27570.1

Oryza barthii 22: OBART03G31810.1

Brachypodium distachyon : EG:BRADI1G11520.2

Aquilegia coerulea v195: Aquca_002_01273.1|PACid:22053397

Actinidia chinensis Hongyang : Achn171121

Solanum tuberosum : PGSC0003DMP400023547

Solanum lycopersicum v.2.3: Solyc11g011470.1.1

Mimulus guttatus v140: mgv1a001913m|PACid:17676324

Mimulus guttatus v140: mgv1a001899m|PACid:17675108

Populus trichocarpa v156: POPTR_0004s08110.1|PACid:18226893

Populus trichocarpa v156: POPTR_0017s02340.1|PACid:18210810

Manihot esculenta v147: cassava4.1_002356m|PACid:17964462

Prunus persica v139: ppa001643m|PACid:17658719

Malus domestica v196: MDP0000319798|PACid:22628938

Malus domestica v196: MDP0000256239|PACid:22659155

Fragaria vesca : gene30496

Cucumis sativus v122: Cucsa.108610.1|PACid:16959757

Glycine max v109: Glyma11g33480.1|PACid:16285242

Glycine max v109: Glyma18g04730.1|PACid:16307930

Phaseolus vulgaris v186: Phvulv091025354m|PACid:23535135

Medicago truncatula : Medtr3g065130.1

Carica papaya : evm.TU.supercontig_116.77

Arabidopsis thaliana 10: AT5G37510.2

Arabidopsis thaliana 10: AT5G37510.1

Arabidopsis lyrata : jgi|Araly1|881232|Al_scaffold_0001_2999

Arabidopsis lyrata : jgi|Araly1|915887|scaffold_703629.1

Capsella rubella v183: Carubv10004217m|PACid:20893616

Brassica rapa Chiifu-401 1.2: Bra028124

Thellungiella halophila v173: Thhalv10027640m|PACid:20189533

Citrus sinensis v154: orange1.1g004627m|PACid:18135448

Citrus clementina v165: clementine0.9_003308m|PACid:19285471

Gossypium raimondii v221: Gorai.001G197100.1|PACid:26823902

Gossypium raimondii v221: Gorai.001G204300.1|PACid:26824559

Theobroma cacao B97-61/B2 v1: Tc00_g023430

Eucalyptus grandis v201: Eucgr.J01621.1|PACid:23599608

Pinus taeda: PITA_000046800-RA

Candida lusitaniae ATCC 42720 : CLUT_05783

Aspergillus niger ATCC 1015 : est_fge1_pm_C_110004.1

Aspergillus oryzae RIB40 : AO090102000645

Aspergillus terreus NIH2624 : ATET_07974

Histoplasma capsulatum class NAmI strain WU24 : HCAG_06929T0

Leptosphaeria maculans 22: CBX96795

Verticillium dahliae VdLs.17 : VDAG_08889T0

Trametes versicolor v1.0: jgi|Trave1|154794|estExt_Genewise1.C_12_t10478

Dichomitus squalens: jgi|Dicsq1|85805|estExt_Genewise1.C_12_t10171

Fomitopsis pinicola FP-58527 SS1 v3.0: jgi|Fompi3|161048|Fompi1.estExt_fgenesh1_kg.C_270007

Fomitopsis pinicolav1.0: jgi|Fompi1|161048|estExt_fgenesh1_kg.C_270007

Wolfiporia cocos MD-104 SS10 v1.0: jgi|Wolco1|158159|gm1.11104_g

Tulasnella calospora AL13/4D v1.0: jgi|Tulca1|158305|CE71060_27679

Sebacina vermifera MAFF 305830 v1.0: jgi|Sebve1|331479|fgenesh1_kg.42_#_59_#_Locus2090v1rpkm91.80

Gloeophyllum trabeumv1.0: jgi|Glotr1_1|133515|gm1.9822_g

Heterobasidion annosum : jgi|Hetan1|156489|estExt_fgenesh2_pm.C_80063

Stereum hirsutum FP-91666 SS1 v1.0: jgi|Stehi1|110434|fgenesh1_pg.6_#_120

Schizophyllum commune : jgi|Schco1|68699|estExt_Genewise1Plus.C_60823

Hebeloma cylindrosporum h7 v2.0: jgi|Hebcy2|449248|fgenesh1_kg.39_#_63_#_Locus830v1rpkm80.12

Galerina marginata v1.0: jgi|Galma1|162028|estExt_Genemark1.C_570009

Amanita muscaria Koide v1.0: jgi|Amamu1|78981|e_gw1.33.92.1

Amanita thiersii Skay4041 v1.0: jgi|Amath1|70260|fgenesh1_kg.249_#_4_#_isotig20264

Pleurotus ostreatus : jgi|PleosPC15_1|60928|estExt_fgenesh1_pm.C_10911

Coprinopsis cinerea okayama7 130 v3: CC1G_11265T0

Scleroderma citrinum Foug A v1.0: jgi|Sclci1|137753|e_gw1.162.101.1

Pisolithus tinctorius Marx 270 v1.0: jgi|Pisti1|858254|CE685361_54154

Pisolithus microcarpus 441 v1.0: jgi|Pismi1|102340|e_gw1.54.71.1

Paxillus rubicundulus Ve08.2h10 v1.0: jgi|Paxru1|826624|fgenesh1_kg.197_#_5_#_Locus74v2rpkm90.71_PRE

Hydnomerulius pinastri v2.0: jgi|Hydpi2|89588|e_gw1.11.251.1

Coniophora puteana: jgi|Conpu1|106027|estExt_Genewise1.C_8_t10054

Serpula lacrymans var. lacrymans S7.9 : jgi|Serla_S7_9|368495|fgenesh2_pm.5_#_804

Puccinia graminis f. sp. tritici CRL 75-36-700-3 : PGTT_06894

Ustilago maydis : UM04822

Sporisorium reilianum 22: CBQ69778

Malassezia globosa CBS 7966 : gi|159104755|gb|EDP43643.1|

Malassezia globosa CBS 7966 : gi|164659466|ref|XP_001730857.1|

Capsaspora owczarzaki ATCC 30864 : CAOG_08216T0

Monosiga brevicollis : jgi|Monbr1|37042|estExt_fgenesh1_pg.C_100024

Thelohanellus kitauei: KII67334

Taenia solium : TsM_000533000;OldName=maker_23279

Echinococcus granulosus : EgrG_001075900.1

Echinococcus multilocularis : EmuJ_001075900.1

Brugia malayi WS250: Bm6574

Ixodes scapularis : ISCW003299-PA

Tetranychus urticae : tetur47g00180

Sarcoptes scabiei: SSCA006695-PA

Megaselia scalaris 22: MESCA002247-PA

Drosophila mojavensis 1.3: FBpp0163926

Drosophila ananassae 1.3: FBpp0122711

Drosophila erecta 1.3: FBpp0136519

Drosophila melanogaster 76_5: FBpp0071128

Drosophila melanogaster 76_5: FBpp0071129

Drosophila sechellia 1.3: FBpp0192671

Drosophila yakuba 1.3: FBpp0262476

Drosophila suzukii: DS10_00005943

Drosophila pseudoobscura 2.13: FBpp0272339

Drosophila willistoni 1.3: FBpp0239382

Drosophila grimshawi 1.3: FBpp0145874

Lucilia cuprina: KNC33522

Helobdella robusta : jgi|Helro1|185731

Adineta vaga: GSADVT00008831001

Adineta vaga: GSADVT00065556001

Oreochromis niloticus 76_1.0: ENSONIP00000010755

Poecilia formosa 76: ENSPFOP00000007346

Poecilia formosa 76: ENSPFOP00000009967

Poecilia formosa 76: ENSPFOP00000015447

Xiphophorus maculatus 76_4.4.2: ENSXMAP00000010626

Oryzias latipes 76_1: ENSORLP00000007555

Tetraodon nigroviridis 76_8: ENSTNIP00000009318

Lepisosteus oculatus 76: ENSLOCP00000013292

Latimeria chalumnae 76_1: ENSLACP00000017699

Xenopus tropicalis 76_4.2: ENSXETP00000022294

Pelodiscus sinensis 76_1.0: ENSPSIP00000017923

Sarcophilus harrisii 76_7.0: ENSSHAP00000021068

Choloepus hoffmanni 76_1: ENSCHOP00000012233

Dasypus novemcinctus 76_2: ENSDNOP00000004953

Echinops telfairi 76: ENSETEP00000012615

Sorex araneus 76_1: ENSSARP00000001364

Myotis lucifugus 76_2.0: ENSMLUP00000015124

Canis familiaris 76_3.1: ENSCAFP00000019660

Ailuropoda melanoleuca 76_1: ENSAMEP00000003225

Sus scrofa 76_10.2: ENSSSCP00000017086

Physcomitrella patens subsp. patens 22: PP1S170_67V6.1

Callithrix jacchus 76_3.2.1: ENSCJAP00000010648

Homo sapiens 76_38: ENSP00000392709