SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 54171,101936,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54171 - DNA-binding domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

48 sequences contain the 54171,101936,_gap_ domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Musa acuminata 22: GSMUA_Achr11P06170_001

Musa acuminata 22: GSMUA_Achr4P03670_001

Musa acuminata 22: GSMUA_Achr4P06710_001

Musa acuminata 22: GSMUA_Achr6P01420_001

Musa acuminata 22: GSMUA_Achr8P14650_001

Musa balbisiana: ITC1587_Bchr6_P14906

Panicum virgatum v202: Pavirv00001983m|PACid:23759604

Panicum virgatum v202: Pavirv00059632m|PACid:23776324

Phyllostachys heterocyclavar. pubescens: PH01000581G0530

Brachypodium distachyon : EG:BRADI2G02720.1

Triticum aestivum 22: Traes_3B_68BFA25F1.1

Triticum aestivum 22: Traes_3B_90BE2090B.1

Aquilegia coerulea v195: Aquca_011_00122.1|PACid:22038526

Actinidia chinensis Hongyang : Achn252961

Solanum lycopersicum v.2.3: Solyc03g083110.1.1

Vitis vinifera : GSVIVT01027463001

Populus trichocarpa v156: POPTR_0003s21810.1|PACid:18217739

Manihot esculenta v147: cassava4.1_030248m|PACid:17986136

Prunus persica v139: ppa021899m|PACid:17641674

Malus domestica v196: MDP0000534780|PACid:22663807

Malus domestica v196: MDP0000485280|PACid:22659457

Malus domestica v196: MDP0000321569|PACid:22635836

Fragaria vesca : gene10330

Cucumis sativus v122: Cucsa.350980.1|PACid:16979936

Glycine max v109: Glyma10g34760.1|PACid:16280958

Phaseolus vulgaris v186: Phvulv091003593m|PACid:23552026

Carica papaya : evm.TU.contig_32277.1

Arabidopsis thaliana 10: AT1G50680.1

Arabidopsis thaliana 10: AT1G51120.1

Arabidopsis lyrata : jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1

Arabidopsis lyrata : jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1

Brassica rapa Chiifu-401 1.2: Bra014282

Brassica rapa Chiifu-401 1.2: Bra018854

Brassica rapa Chiifu-401 1.2: Bra030458

Citrus sinensis v154: orange1.1g018549m|PACid:18121952

Citrus sinensis v154: orange1.1g020733m|PACid:18121953

Citrus clementina v165: clementine0.9_014050m|PACid:19262961

Citrus clementina v165: clementine0.9_014064m|PACid:19262960

Gossypium raimondii v221: Gorai.009G020200.1|PACid:26764134

Gossypium raimondii v221: Gorai.009G020300.1|PACid:26770466

Gossypium raimondii v221: Gorai.004G018300.1|PACid:26775824

Gossypium raimondii v221: Gorai.013G204000.1|PACid:26785963

Gossypium raimondii v221: Gorai.013G080000.1|PACid:26787762

Gossypium raimondii v221: Gorai.013G249100.1|PACid:26789339

Gossypium raimondii v221: Gorai.013G204200.1|PACid:26790825

Theobroma cacao B97-61/B2 v1: Tc01_g015370

Picea abies: MA_116574g0010

Pinus taeda: PITA_000040012-RA