SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,54171,101936,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54171 - DNA-binding domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

88 sequences contain the _gap_,54171,101936,_gap_ domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Amborella trichopoda 22: ERN05438

Musa acuminata 22: GSMUA_Achr2P22560_001

Musa acuminata 22: GSMUA_Achr3P21100_001

Musa acuminata 22: GSMUA_Achr5P09950_001

Musa acuminata 22: GSMUA_Achr8P18260_001

Musa acuminata 22: GSMUA_AchrUn_randomP06880_001

Musa balbisiana: ITC1587_Bchr11_P32264

Musa balbisiana: ITC1587_Bchr3_P07395

Musa balbisiana: ITC1587_Bchr4_P08726

Musa balbisiana: ITC1587_Bchr5_P12545

Musa balbisiana: ITC1587_Bchr8_P22823

Musa balbisiana: ITC1587_BchrUn_random_P35520

Sorghum bicolor : jgi|Sorbi1|5052703|Sb03g006590

Sorghum bicolor : jgi|Sorbi1|5060903|Sb09g027530

Zea mays v181: GRMZM2G159592_T01|PACid:20852281

Zea mays v181: GRMZM2G169654_T01|PACid:20827658

Zea mays subsp. mays : GRMZM2G159592_P01

Zea mays subsp. mays : GRMZM2G169654_P01

Setaria italica v164: Si024576m|PACid:19699916

Setaria italica v164: Si001909m|PACid:19678624

Setaria italica v164: Si004045m|PACid:19675231

Panicum virgatum v202: Pavirv00035367m|PACid:23758453

Panicum virgatum v202: Pavirv00052918m|PACid:23770167

Panicum virgatum v202: Pavirv00010877m|PACid:23800086

Panicum virgatum v202: Pavirv00045038m|PACid:23818121

Panicum virgatum v202: Pavirv00033100m|PACid:23823843

Phyllostachys heterocyclavar. pubescens: PH01000015G1290

Phyllostachys heterocyclavar. pubescens: PH01000024G2370

Phyllostachys heterocyclavar. pubescens: PH01000281G0890

Phyllostachys heterocyclavar. pubescens: PH01000297G0830

Phyllostachys heterocyclavar. pubescens: PH01001568G0220

Phyllostachys heterocyclavar. pubescens: PH01001971G0060

Oryza sativa v193: LOC_Os01g04800.1|PACid:21905194

Oryza sativa v193: LOC_Os01g49830.1|PACid:21905577

Oryza sativa ssp. japonica 5.0: LOC_Os01g04800.1|13101.m00443|protein

Oryza sativa ssp. japonica 5.0: LOC_Os01g49830.1|13101.m05187|protein

Oryza nivara 22: ONIVA01G31290.1

Oryza nivara 22: ONIVA01G02990.1

Oryza punctata 22: OPUNC01G02270.1

Oryza punctata 22: OPUNC01G27280.1

Oryza glaberrima: ORGLA01G0225300.1

Oryza glaberrima: ORGLA01G0022600.1

Oryza glumaepatula 22: OGLUM01G31260.1

Oryza meridionalis 22: OMERI01G02460.1

Oryza meridionalis 22: OMERI01G24380.1

Oryza barthii 22: OBART01G27360.1

Brachypodium distachyon : EG:BRADI2G02710.1

Brachypodium distachyon : EG:BRADI2G17610.1

Aegilops tauschii 22: EMT31332

Triticum aestivum 22: Traes_3B_DF7E92499.2

Triticum aestivum 22: Traes_3B_DF7E924991.2

Triticum urartu 22: TRIUR3_24851-P1

Aquilegia coerulea v195: Aquca_002_01106.1|PACid:22052086

Aquilegia coerulea v195: Aquca_026_00225.1|PACid:22056011

Actinidia chinensis Hongyang : Achn107011

Actinidia chinensis Hongyang : Achn251751

Actinidia chinensis Hongyang : Achn170441

Solanum tuberosum : PGSC0003DMP400001547

Solanum lycopersicum v.2.3: Solyc05g009790.1.1

Manihot esculenta v147: cassava4.1_010068m|PACid:17962687

Manihot esculenta v147: cassava4.1_010157m|PACid:17968962

Linum usitatissimum v200: Lus10041487|PACid:23146856

Linum usitatissimum v200: Lus10021707|PACid:23180256

Malus domestica v196: MDP0000526584|PACid:22649377

Malus domestica v196: MDP0000939633|PACid:22667205

Fragaria vesca : gene03871

Fragaria vesca : gene07828

Glycine max v109: Glyma01g22260.1|PACid:16244231

Phaseolus vulgaris v186: Phvulv091022867m|PACid:23558543

Medicago truncatula : Medtr5g053920.1

Capsella rubella v183: Carubv10020536m|PACid:20904479

Brassica rapa Chiifu-401 1.2: Bra011002

Brassica rapa Chiifu-401 1.2: Bra024735

Thellungiella halophila v173: Thhalv10012377m|PACid:20184279

Citrus sinensis v154: orange1.1g017035m|PACid:18121828

Citrus clementina v165: clementine0.9_013116m|PACid:19260019

Gossypium raimondii v221: Gorai.008G185900.1|PACid:26819220

Theobroma cacao B97-61/B2 v1: Tc02_g034560

Theobroma cacao B97-61/B2 v1: Tc05_g029730

Eucalyptus grandis v201: Eucgr.B03048.1|PACid:23568281

Picea abies: MA_178646g0010

Picea abies: MA_23673g0010

Pinus taeda: PITA_000068539-RA

Pinus taeda: PITA_000039996-RA

Pinus taeda: PITA_000038216-RA

Pinus taeda: PITA_000054020-RA

Pinus taeda: PITA_000082330-RA

Pinus taeda: PITA_000050615-RA