SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,54171,101936 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54171 - DNA-binding domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

46 sequences contain the _gap_,54171,101936 domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Musa acuminata 22: GSMUA_Achr1P05400_001

Musa acuminata 22: GSMUA_Achr1P21250_001

Musa acuminata 22: GSMUA_Achr6P09880_001

Musa acuminata 22: GSMUA_Achr9P21470_001

Musa balbisiana: ITC1587_Bchr1_P00512

Musa balbisiana: ITC1587_Bchr2_P05096

Musa balbisiana: ITC1587_Bchr6_P15660

Musa balbisiana: ITC1587_Bchr8_P23528

Zea mays v181: GRMZM2G059939_T01|PACid:20819956

Zea mays subsp. mays : GRMZM2G059939_P01

Oryza sativa v193: LOC_Os01g04750.1|PACid:21910448

Oryza sativa ssp. japonica 5.0: LOC_Os01g04750.1|13101.m00438|protein

Oryza nivara 22: ONIVA01G02970.1

Oryza glaberrima: ORGLA01G0022400.1

Oryza glumaepatula 22: OGLUM01G02850.1

Oryza meridionalis 22: OMERI01G02450.1

Oryza barthii 22: OBART01G02610.1

Vitis vinifera : GSVIVT01036447001

Populus trichocarpa v156: POPTR_0010s13930.1|PACid:18242382

Populus trichocarpa v156: POPTR_0008s11600.1|PACid:18249445

Linum usitatissimum v200: Lus10035059|PACid:23162431

Malus domestica v196: MDP0000207722|PACid:22671640

Malus domestica v196: MDP0000549056|PACid:22637942

Fragaria vesca : gene26847

Glycine max v109: Glyma20g32730.1|PACid:16317646

Arabidopsis thaliana 10: AT1G13260.1

Arabidopsis thaliana 10: AT1G68840.1

Arabidopsis thaliana 10: AT1G68840.2

Arabidopsis thaliana 10: AT1G25560.1

Arabidopsis thaliana 10: AT3G25730.1

Arabidopsis lyrata : jgi|Araly1|888685|scaffold_101479.1

Arabidopsis lyrata : jgi|Araly1|890147|scaffold_102941.1

Arabidopsis lyrata : jgi|Araly1|476011|fgenesh2_kg.2__1141__AT1G68840.1

Arabidopsis lyrata : jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1

Capsella rubella v183: Carubv10009612m|PACid:20889422

Brassica rapa Chiifu-401 1.2: Bra019821

Brassica rapa Chiifu-401 1.2: Bra026509

Brassica rapa Chiifu-401 1.2: Bra026917

Brassica rapa Chiifu-401 1.2: Bra038346

Thellungiella halophila v173: Thhalv10007983m|PACid:20187835

Thellungiella halophila v173: Thhalv10019566m|PACid:20192106

Thellungiella halophila v173: Thhalv10004508m|PACid:20200254

Gossypium raimondii v221: Gorai.005G138100.1|PACid:26806131

Theobroma cacao B97-61/B2 v1: Tc00_g027220

Eucalyptus grandis v201: Eucgr.D00053.1|PACid:23573847

Eucalyptus grandis v201: Eucgr.L01673.1|PACid:23606585