SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,54171,_gap_,101936,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54171 - DNA-binding domain
101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

21 sequences contain the _gap_,54171,_gap_,101936,_gap_ domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Sorghum bicolor : jgi|Sorbi1|5053553|Sb03g031860

Zea mays v181: GRMZM2G059939_T02|PACid:20819955

Zea mays subsp. mays : GRMZM2G059939_P02

Oryza sativa v193: LOC_Os05g47650.1|PACid:21942109

Oryza sativa ssp. japonica 5.0: LOC_Os05g47650.1|13105.m05050|protein

Oryza nivara 22: ONIVA05G26000.1

Oryza punctata 22: OPUNC05G22370.1

Oryza glumaepatula 22: OGLUM05G26380.1

Brachypodium distachyon : EG:BRADI2G47220.1

Solanum tuberosum : PGSC0003DMP400013222

Solanum lycopersicum v.2.3: Solyc04g007000.1.1

Prunus persica v139: ppa006243m|PACid:17664074

Malus domestica v196: MDP0000128924|PACid:22664801

Glycine max v109: Glyma02g11060.1|PACid:16247693

Medicago truncatula : Medtr1g093600.1

Pinus taeda: PITA_000040067-RA

Pinus taeda: PITA_000033801-RA

Pinus taeda: PITA_000038031-RA

Pinus taeda: PITA_000006697-RA

Physcomitrella patens subsp. patens 22: PP1S63_80V6.1

Physcomitrella patens subsp. patens 22: PP1S135_69V6.1